Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5390g00046 ATGGAGAACGGAGTGAAGAGCAATGGAGATACAAAGTCACCGACTTTGGTAGAAAAGACTGAGATGGAGACAGAGGAAGTAGATGTTAAGAATGACGAGCCTTCTTTTATATCAAGGTCAATGGAAGAAGAGGAAAAACAGCTTTTGGAAACTCGAATCAAGGAAGAGAAGGAGGAATCCAAACATGAGCCAGACGAGGCACCAAAGCTTAATGAAAGTCAATTTAGCAAGTTGGATGAGCTTTTAACGCAAACCCAACTTTACTCGGAATTTTTGCTGGAGAAAATGGATGACATCACACTTAATGGCGGTGAACAAGAGGGCCAACAAGAGGAGGAACCGGTTGAGAAAAAGAGGGGCCGTGGCTCAAAAAGAAGAGCAAAATCAGAATACAATAATAAGAAAGCCAAAAGGGCAGTAGCTGCCATGCTTACAAGATCTAAAGAAAGTGAGAGTGCTGAAGATATGAACCTGACGGAAGAGGAAAGAATTGATAAGGAACAGAAAGAGCTCATACCTCTGTTGACAGGTGGAAAGTTGAAGCAATATCAAATGAAGGGTGTCAAATGGTTGATCTCCTTGTGGCAAAATGGACTGAATGGGATTTTGGCTGATCAAATGGGTCTTGGGAAGACAATCCAAACTATCGGTTTCCTTGCACATCTGAAAGGGAAGGGTTTGGATGGCCCATATTTGATAATTGCTCCTCTATCAACCCTTTCTAATTGGATGAGTGAAATTTCTCGGTTTGCTCCAACACTCACTGCAATTATTTACCATGGTGACAAGAAGGACAGAGATGAGATTCGAAGGAAGCATATGCCTAGAACGATTGGCCCAAAATTTCCCATAGTCATCACTTCCTATGAAGTTGCGTTAAATGATGCTAAGAAATATCTCAGGTTCTACCATTGGAAATATGTTGTAATTGACGAGGGACACAGGCTCAAAAACTCCAAATGCAAATTAGTCCAGATGTTGAAATTCTTGCCCGTTGAAAATAAACTTCTTTTAACTGGGACACCTCTTCAGAATAACCTGGCTGAGCTATGGTCATTGTTGAACTTCATTTTACCTGACATTTTCTCATCCCTTGAAGAATTTGAGTCATGGTTTAATCTGTCAGGAAAGTGCAGTAATGGAGCAACAAAAGAAGAACTAGAAGAAGGAAGAAGAGCTCAGGTGGTAGCTAAGCTCCATGCCATCTTGCGCCCCTTTCTTCTCCGAAGGATGAAGAGTGATGTTGAGCAGATGTTACCACGAAAGAAAGAGATAATTATATATGCCAGTATGACTGAACATCAGAAGAATTTTCAGGAACATTTAATTAATAAGACATTGGAGAAATATTTTCGTGAAAAATCTGCAGTGGGACGTGCTTCCAAAAATCTTCGTAATCTGGTCATTCAGCTTAGAAAGAACTGTAATCATCCTGACCTCTTAGAGTCAGCCTTCGATGATTCGTTTCTCTATCCACCTGTCGATGAGATAGTTGAACAATGTGGGAAATTCCGTTTACTAGACCGTCTGTTGGCTCGTTTATTTGCACGGAAGCACAAAGTTCTAATCTTCAGCCAGTGGACTAAAATTTTGGATATAATGGATTACTATTTTAGTGAAAGGGGCCTTGAAGTCTGCAGAATTGATGGCAGTGTAAAGCTAGATGAGAGGAAAAGACAGATTCAGGAGTTCAATGATGTGAATAGCAATTACAGGATCTTTCTTCTCAGTACTAGGGCTGGGGGATTGGGAATCAACCTTACTGCAGCTGATACTTGTATCATTTATGACAGTGATTGGAATCCTCAGATTGATTTACAGGCCATGGATAGATGTCACAGAATAGGTCAAACTAAACCTGTTCATGTTTACAGGCTTGCTACAGCTCACTCCGTGGAGGGTCGCATGTTGAAAAGGGCTTTCAGCAAGTTGAAGCTTGAGCATGTGGTGATTGGAAAGGGGCAATTTCATCAAGAACGGATGAAGCCCAACTCAATGGATAACAAAGAGGATGAGGAATTGTTGGCATTGCTTCAAGAGGAAGAATCTGCTGAAGACAAAGCGATCCAAACAGATATTAGTGATGAAGACTTAGAGAAGCTTTTGGATCGCAGTGATCTTGTCTCTGGTAACTTAAATTGTCCGAGCAAAATTCCTCTTAAAGGGCCTGGATGGGAGGTGGTGATTCCAACTGGGAGCATGCTTTCTACTCTTAACAGCTAA 2223 0.4121 MENGVKSNGDTKSPTLVEKTEMETEEVDVKNDEPSFISRSMEEEEKQLLETRIKEEKEESKHEPDEAPKLNESQFSKLDELLTQTQLYSEFLLEKMDDITLNGGEQEGQQEEEPVEKKRGRGSKRRAKSEYNNKKAKRAVAAMLTRSKESESAEDMNLTEEERIDKEQKELIPLLTGGKLKQYQMKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLAHLKGKGLDGPYLIIAPLSTLSNWMSEISRFAPTLTAIIYHGDKKDRDEIRRKHMPRTIGPKFPIVITSYEVALNDAKKYLRFYHWKYVVIDEGHRLKNSKCKLVQMLKFLPVENKLLLTGTPLQNNLAELWSLLNFILPDIFSSLEEFESWFNLSGKCSNGATKEELEEGRRAQVVAKLHAILRPFLLRRMKSDVEQMLPRKKEIIIYASMTEHQKNFQEHLINKTLEKYFREKSAVGRASKNLRNLVIQLRKNCNHPDLLESAFDDSFLYPPVDEIVEQCGKFRLLDRLLARLFARKHKVLIFSQWTKILDIMDYYFSERGLEVCRIDGSVKLDERKRQIQEFNDVNSNYRIFLLSTRAGGLGINLTAADTCIIYDSDWNPQIDLQAMDRCHRIGQTKPVHVYRLATAHSVEGRMLKRAFSKLKLEHVVIGKGQFHQERMKPNSMDNKEDEELLALLQEEESAEDKAIQTDISDEDLEKLLDRSDLVSGNLNCPSKIPLKGPGWEVVIPTGSMLSTLNS 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5390g00046 740 SMART helicmild6 532 616 IPR001650 -
Pral5390g00046 740 SMART ultradead3 176 371 IPR014001 -
Pral5390g00046 740 Gene3D - 416 714 IPR027417 -
Pral5390g00046 740 MobiDBLite consensus disorder prediction 1 15 - -
Pral5390g00046 740 Pfam Helicase conserved C-terminal domain 505 616 IPR001650 -
Pral5390g00046 740 Gene3D - 181 411 IPR038718 -
Pral5390g00046 740 MobiDBLite consensus disorder prediction 103 138 - -
Pral5390g00046 740 FunFam ATP-dependent DNA helicase DDM1 174 419 - -
Pral5390g00046 740 Coils Coil 39 61 - -
Pral5390g00046 740 MobiDBLite consensus disorder prediction 16 73 - -
Pral5390g00046 740 CDD SF2_C_SNF 492 626 - -
Pral5390g00046 740 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 192 360 IPR014001 -
Pral5390g00046 740 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 148 410 IPR027417 -
Pral5390g00046 740 FunFam Chromatin complex subunit A 106 420 647 - -
Pral5390g00046 740 PANTHER SNF2/RAD54 HELICASE FAMILY 17 681 - -
Pral5390g00046 740 Pfam SNF2-related domain 183 480 IPR000330 GO:0005524|GO:0140658
Pral5390g00046 740 MobiDBLite consensus disorder prediction 1 77 - -
Pral5390g00046 740 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 412 706 IPR027417 -
Pral5390g00046 740 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 506 662 IPR001650 -
Pral5390g00046 740 Coils Coil 150 170 - -
Pral5390g00046 740 MobiDBLite consensus disorder prediction 110 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5390g00046 Pral-Chr5390 223485 229349 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5390g00046 166 637 RAD5 or RAD16-like Gene Family AT3G16600 25.260 6.35e-33 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pral5390g00046 SNF2_N 5.4e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5390g00046 K19001 - cave:132188478 1122.84