Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5390g00042 ATGGGAGACTTCAATGATGCTTTCATGCGAAACCAAAACGCCGCCGTGCAGGCTCGCACCAAAGCTCAGAACCGTGCCAACGTCCTCCAACTCAAGCTGATCGGACAGAGTCATCCTACTGGTCTCACGGCTAATCTTTTGAAGCTGTTTGAGCCTCGGCCTCCGCTAGAGTATAAAGCACCTCCAGAAAAAAGGAAATGTCCGCCATTAACAGGGATGGCACAATTTGTGAGTAAATTCGCTGAACCTGGAGATCCCGAATATTCTCCTCCTGTCCAGGAAGCTGAGACTCCGATGCAAAGAAGAGCTAGGATACACAAGCTAAGATTAGAGAAGGGAGCAGCAAAGGCTGCTGAAGAGCTAGAAAAATATGATCCACATAATGACCCAAATATTTCAGGAGATCCCTACAAGACCCTGTTTGTGGCCAGACTTAGTTATGAGACGACTGAGAGCAGAATCAAAAGGGAGTTTGAGTCATATGGTCCAATCAAACGGGTTCGATTGGTTACTGACAAAAGCACAAATAAACCCAAGGGTTATGCATTCATTGAGTACCTTCACACAAGGGACATGAAAGCTGCTTATAAGCAAGCTGATGGTAGGAAAATTGAGGGTAGAAGGGTGCTTGTGGATGTTGAACGTGGAAGGACTGTTCCTAATTGGAGGCCTCGCCGACTAGGCGGTGGGCTTGGTACTACAAGAGTAGGGGGTGAAGAAGTTAATCAGCGGTATTCTGGGAGGGAACAACTGCAATCAGGACCTTCTCGTTCTGAAGAACCAAAAGTGCGGGAGGAACGACAGGTTGATCGGGATAGAGAAAAATCTCGTGAAAGAGGGAGGGACAAGGATAGAGAACGGGAACGATCACGTGAACGCTCTCATGATAGGAGCCGTACTCGGGATCATAGGGAGGATAGACATCACAGAGATCGGGATAGGACTAGAGACAGAGAAAGGGAAAGAGATCGTGGTCGTGACCGAGATAGAGATCGTGGTCGTGATCGGGAGCGAGGACGTGATCGTGATAGGGAGAGGGATCGTGACCGCCATCGTGAAAGGGATAGGGACTATGAAGATCTTGAACGTGGACGCTCGCATGACAGGGAGTCTGATTATGATCGTGTTGATTCCAAACATGAGAGGGACCGACATGGTGAAAGGGGGCGAGACTATGAACCTGAGGATAATCATGCATGGTACAATCAACCTGAGCATGGACATAGGCATGCGGACCCTGGGCGGGATGCTGAGGAGTATGACCACTATGAGCATCATCAAGGGCGAGGGCATTATGATCGTGGAGATGGTGACGATTATGATCAATATCCTGACCCTGATAGGCTGGAGGACGACTACCACAAGGAACACACAGTATCTGAATCTCGTGACCGGGAGAGAAGTCAATCAGAGAGGTCTCGTTCTCGAGAGTATGATTACTAG 1443 0.4886 MGDFNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKAPPEKRKCPPLTGMAQFVSKFAEPGDPEYSPPVQEAETPMQRRARIHKLRLEKGAAKAAEELEKYDPHNDPNISGDPYKTLFVARLSYETTESRIKREFESYGPIKRVRLVTDKSTNKPKGYAFIEYLHTRDMKAAYKQADGRKIEGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEEVNQRYSGREQLQSGPSRSEEPKVREERQVDRDREKSRERGRDKDRERERSRERSHDRSRTRDHREDRHHRDRDRTRDRERERDRGRDRDRDRGRDRERGRDRDRERDRDRHRERDRDYEDLERGRSHDRESDYDRVDSKHERDRHGERGRDYEPEDNHAWYNQPEHGHRHADPGRDAEEYDHYEHHQGRGHYDRGDGDDYDQYPDPDRLEDDYHKEHTVSESRDRERSQSERSRSREYDY 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5390g00042 480 Gene3D - 125 250 IPR012677 -
Pral5390g00042 480 FunFam U1 small nuclear ribonucleoprotein 70 kDa 125 250 - -
Pral5390g00042 480 CDD RRM_snRNP70 137 227 IPR034143 GO:0030619
Pral5390g00042 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 138 216 IPR000504 GO:0003723
Pral5390g00042 480 SUPERFAMILY RNA-binding domain, RBD 126 238 IPR035979 GO:0003676
Pral5390g00042 480 Pfam U1 small nuclear ribonucleoprotein of 70kDa MW N terminal 41 129 IPR022023 -
Pral5390g00042 480 MobiDBLite consensus disorder prediction 220 480 - -
Pral5390g00042 480 MobiDBLite consensus disorder prediction 258 480 - -
Pral5390g00042 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 140 209 IPR000504 GO:0003723
Pral5390g00042 480 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 60 329 - -
Pral5390g00042 480 SMART rrm1_1 139 212 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5390g00042 Pral-Chr5390 207834 213568 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5390g00042 140 186 C2H2 Transcription Factor Family AT2G19380 40.426 1.38e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5390g00042 K11093 - qsa:O6P43_033721 474.937