Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5390g00022 ATGCCAGTTGATTTGGATAATTCTTCAACAGCTTCAGGGGAAGCTAGCGTCTCTTCCTCTGGCAATCAGACTGCTCCTCCAAAGTCCACTGCTAAGAAGAAGAGAAATCTTCCTGGAATGCCAGATCCAGACGCGGAGGTGATTGCACTGTCTCCGAAAACCCTTTTAGCGACGAACCGATTCGTGTGCGAAATCTGCAACAAAGGATTTCAAAGGGATCAGAATCTTCAACTACATCGACGGGGCCATAATCTGCCATGGAAGCTGAGGCAGAGGTCCAGCAAGGAGGTGAGGAAAAGAGTCTATGTCTGTCCCGAGCCAACCTGCGTTCATCATGATCCCTCCAGAGCTTTGGGTGATCTCACCGGAATAAAGAAGCATTTCTGTAGAAAACATGGTGAAAAGAAGTGGAAATGTGACAAGTGTTCAAAGAAATATGCGGTTCAGTCAGATTGGAAGGCTCACTCGAAAATTTGTGGCACCAGAGAGTACAAATGCGATTGTGGGACTTTGTTTTCAAGGAGGGATAGCTTCATCACACACAGGGCATTCTGTGATGCGTTGGCAGAGGAGAGCGCAAGAAATCAGACTCAGCCTCAGACTCAAACCCAGACGCAAGCTCCTGAGAAGCCTAATTCAGAGTCAGACCCAAAAATGATGAGCGGCGATTCATCCCCTACAGTTCCTGCGCCGGCGCCGGCGCCACCGCCACCGCCGCCTCCCCCACCACCTACATCCCCGCCTCCTGCTCCTCAGTCGAATAGTGCCATCCCATCTACCTTGCGGACGAAAAATCCAGAGATGCCAGAAAATCATTCACAGATCATAGAGGAACCACAGGCCACTACTGCACTAAATGGTAGCTGTAGCAGCAGTACTAGCTCAACCAGCAATGGCGGCACCAGCAGTACTGTATTTGCAAGTTTGTTTGCTTCCTCCACTGCATCCGGAAGCATGCAACCTCCTCAACCTCAAGCTCCTCCTGCATTTACTGACCTAATACGGGCCGTGGCTCGCCCAGATCGTCCTGCAGAGCTCTCAGGGCCTTCATCTTCAGAACCCATTTCTCTCTGCCTCTCCACTAGCAATGGGTCGTCAATCTTTGGAACAGGAGGGCAAGAACGTCGCCAGTATGCCCCACCACCACAGCCAACTATGTCCGCCACTGCCCTACTACAGAAAGCCGCCCAAATGGGTGCGGCAGCAACAAATGCTTCATTGCTTCGCGGGTTGGGTATAGTGTCATCGTCCTCGCCGCCTTCATCATTAAGCTTGCAAGATAACGTGCCATGGGGTCAGAGGCAAGTAGAGCCAGAGAATGCCTCTGTTCACGCAGGGCTTGGGCTTGGACTCCCATGTGATGGTGGATCTGGACTGAAGGAGTTGATGATGGGAACGCCCTCCATGTTCGGTCCAAAGCACACGACCCTAGACTTTCTGGGATTGGGGATGGCTGCTGGTGGTGGCACCCCTACCGGTGGCTTGTCAGCACTCATCACTTCTATTGGCGGTGGTCTGGATGTGTCTGCCACAGCAAGACCCTTTGGTGGCGGAGAGATTTCAGGTAAAGATATTGGGAGGAGCTCGTGA 1590 0.5214 MPVDLDNSSTASGEASVSSSGNQTAPPKSTAKKKRNLPGMPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSKEVRKRVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESARNQTQPQTQTQTQAPEKPNSESDPKMMSGDSSPTVPAPAPAPPPPPPPPPPTSPPPAPQSNSAIPSTLRTKNPEMPENHSQIIEEPQATTALNGSCSSSTSSTSNGGTSSTVFASLFASSTASGSMQPPQPQAPPAFTDLIRAVARPDRPAELSGPSSSEPISLCLSTSNGSSIFGTGGQERRQYAPPPQPTMSATALLQKAAQMGAAATNASLLRGLGIVSSSSPPSSLSLQDNVPWGQRQVEPENASVHAGLGLGLPCDGGSGLKELMMGTPSMFGPKHTTLDFLGLGMAAGGGTPTGGLSALITSIGGGLDVSATARPFGGGEISGKDIGRSS 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5390g00022 529 FunFam protein indeterminate-domain 5, chloroplastic-like 115 194 - -
Pral5390g00022 529 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Pral5390g00022 529 MobiDBLite consensus disorder prediction 1 44 - -
Pral5390g00022 529 FunFam protein indeterminate-domain 12-like 40 108 - -
Pral5390g00022 529 SMART c2h2final6 102 132 IPR013087 -
Pral5390g00022 529 SMART c2h2final6 61 83 IPR013087 -
Pral5390g00022 529 SMART c2h2final6 137 157 IPR013087 -
Pral5390g00022 529 MobiDBLite consensus disorder prediction 228 254 - -
Pral5390g00022 529 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 16 486 IPR031140 -
Pral5390g00022 529 Gene3D Classic Zinc Finger 41 107 - -
Pral5390g00022 529 MobiDBLite consensus disorder prediction 255 303 - -
Pral5390g00022 529 MobiDBLite consensus disorder prediction 191 303 - -
Pral5390g00022 529 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Pral5390g00022 529 MobiDBLite consensus disorder prediction 1 30 - -
Pral5390g00022 529 Gene3D Classic Zinc Finger 115 196 - -
Pral5390g00022 529 MobiDBLite consensus disorder prediction 191 222 - -
Pral5390g00022 529 SUPERFAMILY beta-beta-alpha zinc fingers 60 157 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5390g00022 Pral-Chr5390 124006 128060 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5390g00022 1 529 IDZ Gene Family AT5G66730 60.000 0.0 546
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral5390g00022 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5390g00022 K25869 - tcc:18610967 737.643