Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5390g00015 ATGAATCCTCATCCTATTGACGATCACATGGTGCTTGTCTCTCAGCTATACCCTGGCGCTTACTCTCAAATAATTCCTCAACAAGGGGGAACAAAGCCGAGGCGACGTCGCAAGAAGAACAAGGGAGGAGAAAACGGAGATAGCGGAATAAAGAAGAGGAAGCTGAGTGCAGAGCAAGTGAATCTCCTAGAGCTAAACTTCGGGAACGAACATAAATTGGAGTCTGAACGGAAGGACCGGCTGGCGTCGGAGCTGGGCTTGGATCCGCGTCAAGTGGCTGTTTGGTTCCAAAACCGAAGGGCGCGTTGGAAGAGCAAGAAGTTGGAGGAAGAGTACTCTAGCCTTAAGAAAGTCCACGAGTCCACCATTCTCGAGAAATGCCGCCTTGAAACCGAGGTACTGAAGCTGAAGGAGCAGCTTTCAGAGGCAGAGAAAGATATCCAACGGCTTCTGGAGCGGGTCGATAGGGTATCAAGCAGCAACAGTCCCACTTCGTCACAGTCGATGGAAGCTGTGAACCCTTCATTTCTGGGAGATCTTAGGGTTGAGCCTTATGACGATGATGTGTTTTACATGCCACAGACCCATTACATTAATGGCATGGACGAGTGGATATACATATGA 624 0.4936 MNPHPIDDHMVLVSQLYPGAYSQIIPQQGGTKPRRRRKKNKGGENGDSGIKKRKLSAEQVNLLELNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKSKKLEEEYSSLKKVHESTILEKCRLETEVLKLKEQLSEAEKDIQRLLERVDRVSSSNSPTSSQSMEAVNPSFLGDLRVEPYDDDVFYMPQTHYINGMDEWIYI 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5390g00015 207 Gene3D - 43 115 - -
Pral5390g00015 207 MobiDBLite consensus disorder prediction 23 53 - -
Pral5390g00015 207 CDD homeodomain 51 107 IPR001356 GO:0003677
Pral5390g00015 207 ProSiteProfiles 'Homeobox' domain profile. 46 106 IPR001356 GO:0003677
Pral5390g00015 207 ProSitePatterns 'Homeobox' domain signature. 81 104 IPR017970 GO:0000981|GO:0006355
Pral5390g00015 207 FunFam homeobox-leucine zipper protein ATHB-40 43 114 - -
Pral5390g00015 207 Coils Coil 98 118 - -
Pral5390g00015 207 SMART HOX_1 49 110 IPR001356 GO:0003677
Pral5390g00015 207 SUPERFAMILY Homeodomain-like 49 114 IPR009057 -
Pral5390g00015 207 PRINTS Lambda-repressor HTH signature 77 86 IPR000047 GO:0003677
Pral5390g00015 207 PRINTS Lambda-repressor HTH signature 86 102 IPR000047 GO:0003677
Pral5390g00015 207 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 41 167 IPR045224 GO:0003700
Pral5390g00015 207 Pfam Homeodomain 52 104 IPR001356 GO:0003677
Pral5390g00015 207 Coils Coil 133 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5390g00015 Pral-Chr5390 90756 92594 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5390g00015 1 205 Homeobox Transcription Factor Family AT2G18550 53.425 2.36e-72 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Pral5390g00015 Homeodomain 3.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5390g00015 K09338 - qsa:O6P43_024730 283.878