Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5387g00022 ATGGCCTTTGAACACTGCATTTCCCAGGAATGGAAAGGCATTCCAAGTTCCATGATGACAGAGACTGGAAACTACAACGGATGTTTTAATTGCAACATCTGCTTTGACTTTGCTCTTGAACCTGTGGTCACCCTCTGTGGCCACCTCTATTGCTGGCCTTGCATCTACAAGTGGCTTCATGTCCAAAGTGCTTCTATGGCATCTGATGAACACCCACAATGCCCAGTTTGCAGGGCTGATATATGCCCCACCACCTTGGTCCCCCTATATGGCCGGGGTGAAACCCCGGTTCCTTCTGAGCACGACACAAAGGCGTCATGTCACGATATTTTTATACCACCAAGACCACGAGCATTTGGCGCTCAAGCTCTGATGTCAGCATCATCATCTCAAGGTGGCCATCATCAGCATCTTCCTTATCATTATCCTCATCAAAGTCACCAACATTTCAGTTCTCCTCGGTACCAAAGGGAAGGGGATGCCTCATCACAAGTGTTCAATCTCAGTACCACTCTTACACCTCAAGGATTTTACCACCCTGTGGCTGAGATGGTTTATGCCAGAGTGTTTGGCAACCCGGAAAATTTATACGCTTACCCGGATGCTTATCAGCAGATGGGCAGTAACAGCCCGAGACTGAGAAGGCAGGTGATGCAAGCAGATAAGTCATTGAACAGAATCTCAATCTTCCTCTTCTGCTGTTTTGTTCTCTGTCTCATCGTCTTTTGA 729 0.4746 MAFEHCISQEWKGIPSSMMTETGNYNGCFNCNICFDFALEPVVTLCGHLYCWPCIYKWLHVQSASMASDEHPQCPVCRADICPTTLVPLYGRGETPVPSEHDTKASCHDIFIPPRPRAFGAQALMSASSSQGGHHQHLPYHYPHQSHQHFSSPRYQREGDASSQVFNLSTTLTPQGFYHPVAEMVYARVFGNPENLYAYPDAYQQMGSNSPRLRRQVMQADKSLNRISIFLFCCFVLCLIVF 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5387g00022 242 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 9 239 IPR045103 GO:0005783|GO:0006511|GO:0061630
Pral5387g00022 242 ProSitePatterns Zinc finger RING-type signature. 46 55 IPR017907 -
Pral5387g00022 242 SUPERFAMILY RING/U-box 27 90 - -
Pral5387g00022 242 Pfam Zinc finger, C3HC4 type (RING finger) 31 77 IPR018957 GO:0046872
Pral5387g00022 242 ProSiteProfiles Zinc finger RING-type profile. 31 78 IPR001841 -
Pral5387g00022 242 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 91 IPR013083 -
Pral5387g00022 242 SMART ring_2 31 77 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5387g00022 Pral-Chr5387 225342 228328 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5387g00022 7 228 C3H Transcription Factor Family AT4G27470 38.158 6.27e-43 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5387g00022 K10666 - gmx:100779793 300.827