Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5387g00021 ATGGCTGAAAGATTAACGGAGCTAAAGCTCAACAACACAGCCGCGGCAGCCACTGTGGCCTCCGGCAGTGGCAGCGGCGGCGGCCAGTCTCCAAGGGGACGGTGTGTGGCGCCGTTTCTGTTGAAGACGTATGATTTGGTGGAAGAAGGCGGAGTAGCGGATCAAGGTGAAGAAGAAGAAAGGAAGAGACCATCAATAGTGTCATGGAACGAGGAAGGAGATGGTTTCGTAGTGTGGCGTCCTGCAGAATTCTCAGAGCTCATCTTGCCCAGATACTTCAAACACAATAACTTCTCCAGCTTCATCCGCCAATTAAACACCTATGGGTTTAAGAAAGTGTCATCAAAGAGATGGGAATTCAAGCAGGAGAAATTTCAGAGAGGTCACAAGAAGTTGCTGGCGGAGATAACAAGGAAGAAGTGCGAGCCAAGTGTTTTCCCTCCATACTTGAAATCTTGTTCCGAAGAAAATAATAATGCAGCCATAGATGAGGGAACCAATCATAATGATAGTGATAATAATAACAATAATGAATCATTGCTACAGCAGAACCAAGAGCTGAAGAAGCAGAACCAGCATTTACAATCACAAATTGCCCATTTCAAACAATTACAAAGCAGGTTGTTGCAATGTGTCTCCCAATATATGGGCACCCCACCAAAATTAAGTTACCACTCTCCTTGA 684 0.4532 MAERLTELKLNNTAAAATVASGSGSGGGQSPRGRCVAPFLLKTYDLVEEGGVADQGEEEERKRPSIVSWNEEGDGFVVWRPAEFSELILPRYFKHNNFSSFIRQLNTYGFKKVSSKRWEFKQEKFQRGHKKLLAEITRKKCEPSVFPPYLKSCSEENNNAAIDEGTNHNDSDNNNNNESLLQQNQELKKQNQHLQSQIAHFKQLQSRLLQCVSQYMGTPPKLSYHSP 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5387g00021 227 Coils Coil 177 204 - -
Pral5387g00021 227 Pfam HSF-type DNA-binding 39 139 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral5387g00021 227 SUPERFAMILY "Winged helix" DNA-binding domain 36 139 IPR036390 -
Pral5387g00021 227 SMART hsfneu3 35 139 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral5387g00021 227 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 30 217 IPR027725 -
Pral5387g00021 227 ProSitePatterns HSF-type DNA-binding domain signature. 89 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral5387g00021 227 FunFam Heat stress transcription factor A-6b 32 140 - -
Pral5387g00021 227 Gene3D - 32 140 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5387g00021 Pral-Chr5387 216929 219807 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5387g00021 28 227 HSF AT5G62020 35.874 1.13e-44 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pral5387g00021 HSF_DNA-bind 7.4e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5387g00021 K09419 - qsa:O6P43_031835 226.868