Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5387g00009 ATGTCTGACGCTGAAAATCAAACCTCCTTGAAAAATGACGATCGTCGTGGTCCAAAGCCCGACAGGGGCAACCGCGACAAGTTCGATTCTCATGGATCTGATTATGAGAGGCTAAGGATGAGAAAGCGAGATGGAGAGAGGAAAACTTATCATGCACACCATCAGAAGGACTTTAAAAATGGAGGCTTTAGAAGAAAAAGCTATGACAATTATAATCGTCATCAGAACTATGATTATGACAGGCATCGAGGTCATGTTCGAGATGGAGAAATGAGGCATGGATATGGAAGACGATCAAGTTACAGATCCAGGGGGGAATCTAGATCTCGCTCCAGATCCCCGTCTCATTCAGAAAGCAAAAGGATCAGTGGTTTTGACATGGCACCACCATCTGTTGCTGGAGCACCTGCTGCTGTGGTTGATAGTGCAGGGCAAATCCCGGGGATCACTCAGCCAGTAACTCTGCAGAATGTGCCATCATTCGGAATGCCACAGGTTGGAGCTCTTTCCTTAATGTCAGTTCAGCCTATGATGCAGCAGGCTACAAGGCATGCACGACGAGTTTATGTTGGTGGGCTTCCCCCTTTGACTAACGAGCAGGCAGTTGCAGCATTCTTTAGTCATGTTATGGTAGCTATTGGAGGGAATTCTGCTGGTGCAGGTGATTCTGTTGTCAATGTATATATTAATCATGAGAAGAAATTTGCCTTTGTGGAGATGAGAACTGTTGAAGAAGCTAGCAATGCAATGGCATTAGATGGAATCATATTTGAGGGAGTTGCTGTGCGGGTTCGTAGGCCTACAGACTATAACCCTTCAGTCGCTGCCGCTCTAGGTCCGAGCCAACCAAGTCCAAACCTTAACTTATCTGCTGTTGGGCTTGTTGCAGGTGCTATTGGCGGAAGTGAGGGACCTGATCGCGTCTTTGTTGGTGGGCTACCATACTACTTTACTGAAGAACAAATAAAAGAATTGCTCCAAGCTTTTGGGCCTCTCAGAGCTTTTGATCTAGTTAGAGATAAAGACACTGGAAATTCTAAAGGATACGGTTTCTGCTTTTATCAGGATCCAGCCGTAACAGACATTGCTTGTGCCTCTCTGAATGGCCTTAAAATGGGTGACAAAACGCTGACTGTTCGGCGTGCCACAGTCTGTGTACAGTCTAAAACAGAACAGGAGCATATCTTTGCACAGGCACAACAGCATATTGCTATGCAGAAAATAGCCATGGAAGTTGGTGGGCCAAATATTCCAGAAGTGGGAAGAGCATTAACCAAGCTTGATGAAAATGCTACCAAAGTTTTATGCTTAACAAAGGCCGTCACTGCTGATCAACTAAGGGATAATGAAGAGTATGAAGAAATACTGGAAGACATGCGGGATGAATGCTGCAAATTTGGGACCTTGATAAATGTTGTTATCCCACGTCCAAATGGCACCGGTGAGGCTTACCCAGGTGTTGGAAAGGTATTCTTGGAATATTCTGATAGTACGGGAAGTTTGGCTGCAAAAAATGCACTAAATGGGAGGAAATTCGGAGGCAATGCTGTGAGCGCCTTCTATTATTCAGAAGAAAAATATTATAGCATGGAGTATGATGATGTATAA 1608 0.4471 MSDAENQTSLKNDDRRGPKPDRGNRDKFDSHGSDYERLRMRKRDGERKTYHAHHQKDFKNGGFRRKSYDNYNRHQNYDYDRHRGHVRDGEMRHGYGRRSSYRSRGESRSRSRSPSHSESKRISGFDMAPPSVAGAPAAVVDSAGQIPGITQPVTLQNVPSFGMPQVGALSLMSVQPMMQQATRHARRVYVGGLPPLTNEQAVAAFFSHVMVAIGGNSAGAGDSVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPSVAAALGPSQPSPNLNLSAVGLVAGAIGGSEGPDRVFVGGLPYYFTEEQIKELLQAFGPLRAFDLVRDKDTGNSKGYGFCFYQDPAVTDIACASLNGLKMGDKTLTVRRATVCVQSKTEQEHIFAQAQQHIAMQKIAMEVGGPNIPEVGRALTKLDENATKVLCLTKAVTADQLRDNEEYEEILEDMRDECCKFGTLINVVIPRPNGTGEAYPGVGKVFLEYSDSTGSLAAKNALNGRKFGGNAVSAFYYSEEKYYSMEYDDV 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5387g00009 535 SUPERFAMILY RNA-binding domain, RBD 67 266 IPR035979 GO:0003676
Pral5387g00009 535 CDD RRM3_U2AF65 432 519 - -
Pral5387g00009 535 MobiDBLite consensus disorder prediction 1 128 - -
Pral5387g00009 535 Coils Coil 442 462 - -
Pral5387g00009 535 CDD RRM1_U2AF65 185 267 - -
Pral5387g00009 535 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 269 IPR000504 GO:0003723
Pral5387g00009 535 Gene3D - 181 282 IPR012677 -
Pral5387g00009 535 SMART rrm1_1 440 520 IPR000504 GO:0003723
Pral5387g00009 535 SMART rrm1_1 187 265 IPR000504 GO:0003723
Pral5387g00009 535 SMART rrm1_1 307 380 IPR000504 GO:0003723
Pral5387g00009 535 NCBIfam U2 snRNP auxilliary factor, large subunit, splicing factor 25 532 IPR006529 GO:0003723|GO:0005634|GO:0006397
Pral5387g00009 535 FunFam U2 snRNP auxiliary factor large subunit 283 395 - -
Pral5387g00009 535 MobiDBLite consensus disorder prediction 8 119 - -
Pral5387g00009 535 Gene3D - 428 532 IPR012677 -
Pral5387g00009 535 PANTHER RNA-BINDING PROTEIN 12 532 - -
Pral5387g00009 535 FunFam U2 snRNP auxiliary factor large subunit 429 533 - -
Pral5387g00009 535 SUPERFAMILY RNA-binding domain, RBD 307 524 IPR035979 GO:0003676
Pral5387g00009 535 FunFam U2 snRNP auxiliary factor large subunit 181 282 - -
Pral5387g00009 535 CDD RRM2_U2AF65 306 382 - -
Pral5387g00009 535 Gene3D - 300 402 IPR012677 -
Pral5387g00009 535 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 306 384 IPR000504 GO:0003723
Pral5387g00009 535 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 308 377 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5387g00009 Pral-Chr5387 84258 93455 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5387g00009 308 393 Eukaryotic Initiation Factors Gene Family AT1G71770 29.070 7.02e-07 50.1