Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5387g00004 ATGGGTTGTGGCTGCTTTGGAGCCTCAACTATAAAGAGGAAAAGGAGTCCTACTCATAATCCTAATGACGTTGATGGCGTTGCACTTGATAATGTTAAGAATTTCTCTGATAAAGAACTAAGGGTGGCAACAGATAATTATGACTCAAGGAAGAAGATAGGAAGGGGAGGTTTTGGAACTGTTTACCAGGGAACCTTGAGGGATGGAAGACAAGTAGCAGTGAAGACCCTTTCTGCAGGATCAAGGCAAGGAGTCCCTGAATTTTTGACTGAAATCAAGACTATATCAAATGTTAAGCATCCAAACCTTGTTGAATTGATTGGTTGCTCTGTTCAAGGATCTAGTCGTATTCTGGTGTATGAGTACGTGGAAAATAACAGCATTGATCGTGCATTACTTGGCACAAGAAATACAGGCATCAAACTGGACTGGAGAAGAAGATCTGCAATTTGCATGGGTACCGCTAGGGGTCTTGCATTCCTTCATGAGGAACTTGTTCCACACATTGTGCACAGAGACATCAAAGCTAGCAACATACTACTTGACAAAGACTTTAACCCGAAAATAGGGGACTTTGGGTTGGCTAAATTATTCCCTGATGACATCACTCACATTAGCACTAGAATTGCTGGGACAACCGGTTATCTAGCACCCGAATATGCATTAGGTGGTCAGTTAACCATGAAGGCTGACGTATACAGCTTTGGAGTTCTTGTACTGGAAATAATTAGTGGCAAAAGCAGTTCAAGGGCAAATTGGGGGGGAACCGACAAAGTCCTCTTGGAATGGGCTTGGCAACTTCATGAAGAAGGGAGACTTTTGGAGCTAGTGGATCCCGAGATTGGAGAATTTCCTGAAGAAGAAGTGATTAGGTACATGAAGGTAGCTTTTTTCTGCACACAGGCGGCAGCAAACAGAAGGCCACTGATGTCCCAGGTTTTGGATATGCTGTCCAGGAAAATCCGGCTCAATGAGAAGGAGCTAACAGCGCCAGGATTCTTCCAGAATTCAGGAGAATCCTCTAAAAAGAACGTATCCACTGCGTCCACTAGCAATCAAACTCATTCTCTACCCCCCACTATTACTGAGGTGACCCCTCGATGA 1104 0.4402 MGCGCFGASTIKRKRSPTHNPNDVDGVALDNVKNFSDKELRVATDNYDSRKKIGRGGFGTVYQGTLRDGRQVAVKTLSAGSRQGVPEFLTEIKTISNVKHPNLVELIGCSVQGSSRILVYEYVENNSIDRALLGTRNTGIKLDWRRRSAICMGTARGLAFLHEELVPHIVHRDIKASNILLDKDFNPKIGDFGLAKLFPDDITHISTRIAGTTGYLAPEYALGGQLTMKADVYSFGVLVLEIISGKSSSRANWGGTDKVLLEWAWQLHEEGRLLELVDPEIGEFPEEEVIRYMKVAFFCTQAAANRRPLMSQVLDMLSRKIRLNEKELTAPGFFQNSGESSKKNVSTASTSNQTHSLPPTITEVTPR 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5387g00004 367 Gene3D Transferase(Phosphotransferase) domain 1 123 333 - -
Pral5387g00004 367 CDD STKc_IRAK 53 319 - -
Pral5387g00004 367 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 30 352 - -
Pral5387g00004 367 SMART serkin_6 47 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5387g00004 367 FunFam Putative LRR receptor-like serine/threonine-protein kinase 123 329 - -
Pral5387g00004 367 ProSiteProfiles Protein kinase domain profile. 47 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5387g00004 367 Gene3D Phosphorylase Kinase; domain 1 18 122 - -
Pral5387g00004 367 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Pral5387g00004 367 SUPERFAMILY Protein kinase-like (PK-like) 32 346 IPR011009 -
Pral5387g00004 367 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Pral5387g00004 367 Pfam Protein kinase domain 47 250 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5387g00004 367 FunFam cold-responsive protein kinase 1 18 122 - -
Pral5387g00004 367 MobiDBLite consensus disorder prediction 332 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5387g00004 Pral-Chr5387 25005 31633 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5387g00004 10 359 Receptor kinase-like Gene Family AT1G56120 49.300 2.05e-109 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pral5387g00004 Pkinase 1.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5387g00004 - - gmx:100788143 607.06