Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5385g00036 ATGGGTTTGAGTTCGAAGCAGGTTTCTAGTAGTGGGGTTGATTGGAACCAGGCGTTGCTTCAAGATCAGAAGTTGGAACTTCCAAAGCCTCCATTGATGAGCAAACTGCAACAGCAACAGCAGCAGCAGCAGCAGCAGATGCAACAGCAGCGACAGCAATCTCAGCAATCATCGGAGCCTTTGAAGTGTCCGAGGTGTGATTCGACCAACACCAAGTTCTGTTACTACAACAACTACAACAAGTCCCAGCCTCGCCATTTCTGCAGAGCCTGCAAGAGGCACTGGACTAAAGGTGGCACCCTGCGCAATGTCCCCGTTGGCGGTGGCCGGAAAAACAAACGGGTCAAGAAATCATCCACCCGCATCTCTTCCTCCGCCGCCGCCTCCTCAACCTCCGGCAGTGGTGGGTTGAGTACCCGCATGACAATTCAGAGTTCTCTGCAAAGGCCGAGTAATAATCTTCCTCTTCCTTCATCCTCTGCCTCTCTCTTTCAGTCTCTGATTCGTCCTCCTCCGTCACAACCGTCCCTGCTGCTTCCTCATCAGAATCTGATGAACCCCAGAGACTCATCACCACAAAGTAAAGATTTTGGAATTGGGAATTGTACCAGCAGCTTCTTGACTTCGAGTCTGCCTCTTCTTCCTCATCAAAACCAGAGCTTTATCTTCCCTTTCTCAAGCCCGAGCTCTTTTGAGACAAACCCATGTTCTGTTTCAACCTCTCTGAGACCCTCAAGCGTTTACAATAATAATAACAACTACGGCCAAGAGTTGAAGACAATGGAGCAGCCAACCCAAACACAGACACAGCCATGGGAGATACCTTCCACAAGCGTAGCCAATAGGGAAACGTCAAACTACTGGACTTGGGAAGACCTCGATTCGTTGGTCTCAACTGATCTCAATGTTCCCTGGGATGATTCTGATTTAAAACCCTGA 939 0.4941 MGLSSKQVSSSGVDWNQALLQDQKLELPKPPLMSKLQQQQQQQQQQMQQQRQQSQQSSEPLKCPRCDSTNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRVKKSSTRISSSAAASSTSGSGGLSTRMTIQSSLQRPSNNLPLPSSSASLFQSLIRPPPSQPSLLLPHQNLMNPRDSSPQSKDFGIGNCTSSFLTSSLPLLPHQNQSFIFPFSSPSSFETNPCSVSTSLRPSSVYNNNNNYGQELKTMEQPTQTQTQPWEIPSTSVANRETSNYWTWEDLDSLVSTDLNVPWDDSDLKP 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5385g00036 312 MobiDBLite consensus disorder prediction 21 63 - -
Pral5385g00036 312 Coils Coil 33 57 - -
Pral5385g00036 312 MobiDBLite consensus disorder prediction 171 193 - -
Pral5385g00036 312 MobiDBLite consensus disorder prediction 33 63 - -
Pral5385g00036 312 ProSiteProfiles Zinc finger Dof-type profile. 61 115 IPR003851 GO:0003677|GO:0006355
Pral5385g00036 312 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 38 270 IPR045174 GO:0003700|GO:0006355
Pral5385g00036 312 Pfam Dof domain, zinc finger 60 113 IPR003851 GO:0003677|GO:0006355
Pral5385g00036 312 MobiDBLite consensus disorder prediction 99 139 - -
Pral5385g00036 312 MobiDBLite consensus disorder prediction 119 139 - -
Pral5385g00036 312 ProSitePatterns Zinc finger Dof-type signature. 63 99 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5385g00036 Pral-Chr5385 445016 446957 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5385g00036 61 163 C2C2-Dof Transcription Factor Family AT5G60200 52.679 1.08e-30 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pral5385g00036 zf-Dof 1.5e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5385g00036 - - gmx:778119 293.508