Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5385g00015 ATGGATAGCACCGATTCATCTTCAGGGTGTCAGCATCCTCAGCTTCCTCCTGGTTTCCGATTCCATCCCACCGACGAAGAGCTCGTCGTTCACTACCTCAAGCGAAAAGCCGCCTCTGCTCCGCTTCCCGTCGCCATCATTGCCGACGTCGATCTCTACAAGTTCGATCCCTGGGAGCTTCCCGGTAAGGCGGCGTTTGGGGAGCAAGAGTGGTACTTCTTCAGCCCGAGAGATCGGAAGTATCCAAATGGAGCGAGGCCAAACAGGGCAGCCACTTCGGGGTATTGGAAGGCCACCGGAACGGACAAGCCGATATTGTCGTCGGACGGACGAAACCAGAAAGTCGGGGTGAAGAAAGCTCTGGTTTTCTACGGCGGGAAGCCTCCAAAAGGCGTTAAAACCAACTGGATCATGCATGAATATAGGCTCACCGACAACAATTCTTACAGGAATTCTACCCCTAAGCCTCCTCCTCTGCCTTCCGATCCTGCGTCACAATCGACCAAGAAAAACTCCTTAAGGCTTGACAATTGGGTTTTGTGTCGGATATACAAGAAAAACAACAGTAATATGAATACTAGTCTGCAGAGGCCGCCATTGATGGAGCAGGAGAGGGAGATTTGCATGGAGGCTATGCTTCCCACCATATCAAGTTTATCAATGGTTAATAATACTGCTAACGCCGCTCACCAAATCTCCAACCCTCCATTAGGACTCGAGAATGATGACACCTTGTTCGATGGAATTCTGGGCATCGGCGGCGGCGGCGGCGGTGATCCTCATGATAATCACCACTTGTTGTCGTCAAACTCATCAAAGGCCAATAGTTTCCCTCCTGTGAAACGACCCCTCCCATCGCCGTTTTGGAACGAGACCACGGCTGGGTCTCCGTCAGGGTCGTCTTCGTCAAGCAAGAGATTCCATGGCGATCTTAACAGAACTGGGGTGACTAGTACCACTACCTCAGCTGACGACAACAGTTCCTTCATTTCTCTGCTAAGCCAGCTTCCTCCTCAGAATACGGCGACGTTTCATCACCCAAATGCCCTTCTGGGCTCCGTCGGCGACGGTGTTTTGAGGCCGCAATTTCAACTCCCAAGCCTGAATTGGACCTCATAA 1119 0.5174 MDSTDSSSGCQHPQLPPGFRFHPTDEELVVHYLKRKAASAPLPVAIIADVDLYKFDPWELPGKAAFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILSSDGRNQKVGVKKALVFYGGKPPKGVKTNWIMHEYRLTDNNSYRNSTPKPPPLPSDPASQSTKKNSLRLDNWVLCRIYKKNNSNMNTSLQRPPLMEQEREICMEAMLPTISSLSMVNNTANAAHQISNPPLGLENDDTLFDGILGIGGGGGGDPHDNHHLLSSNSSKANSFPPVKRPLPSPFWNETTAGSPSGSSSSSKRFHGDLNRTGVTSTTTSADDNSSFISLLSQLPPQNTATFHHPNALLGSVGDGVLRPQFQLPSLNWTS 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5385g00015 372 MobiDBLite consensus disorder prediction 1 21 - -
Pral5385g00015 372 SUPERFAMILY NAC domain 9 186 IPR036093 GO:0003677|GO:0006355
Pral5385g00015 372 ProSiteProfiles NAC domain profile. 15 186 IPR003441 GO:0003677|GO:0006355
Pral5385g00015 372 MobiDBLite consensus disorder prediction 146 171 - -
Pral5385g00015 372 Gene3D NAC domain 24 191 IPR036093 GO:0003677|GO:0006355
Pral5385g00015 372 FunFam NAC transcription factor 56 24 191 - -
Pral5385g00015 372 Pfam No apical meristem (NAM) protein 16 143 IPR003441 GO:0003677|GO:0006355
Pral5385g00015 372 MobiDBLite consensus disorder prediction 252 324 - -
Pral5385g00015 372 PANTHER NAC TRANSCRIPTION FACTOR 56 15 217 - -
Pral5385g00015 372 MobiDBLite consensus disorder prediction 289 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5385g00015 Pral-Chr5385 114645 116186 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5385g00015 5 372 NAC Transcription Factor Family AT1G61110 53.050 7.58e-108 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pral5385g00015 NAM 2.9e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5385g00015 - - qsa:O6P43_031801 460.299