Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5385g00010 ATGGCGGACGAGGGGTTCGATTACTCGGACCTGGTTGACGGAGATGCTGATGCTGATGATAAGTTGTTTATAGATCTTGACACCGTTTTGAATGTCCTTGATGAGGATTGTGATCCTTCGGAGAGTAGTCTGGAGGGTTTTTCATTAAAAAATGTCTCACCTGGCGAATCCAGCATCCACGATAATTTTCAGCTTCAAAGCGGAAATTCCATGCTTTGCTGTGATCATGAAAATCAAGGACCTCCTTCACAGACTTGCTCCTCCTCTCATGCTGTCCCTGATGGTTTTCAGCAGTTGGATCCTCTGGATGGAAGTAACGAGATTTGCTACACAGAAAGGGAAGGAACTTCAGGATGTGAGGTGCCAGCCCAATCTTTGGAACCTAGTGCTCCCGAGCCACATTTCAACAATACATCGGTTTGTGGGGATAATTTGAACTTGAATCCTCTCTGGAAGGAAAAAAAGGAAAGCCAACTCAAGCATGTGGGAGAGGACGTTAAGTCTGAATATGCTTCTTACAGCCCTATGATTGAGAATAGTGACGTAAGTTTTGCACAATATGGAGCTTTTGATGAAGATATGTGTGAAGGAGTTTCTGGGCAGCCGGAATCTGACTCGTGTACGTCTTTTGAAATGTCATTCATGGATGCTAATGGAGGCTCACATATTGGAACATCAACCAATTCTACTATTTGCCGAGGCTTCAATGCTCTTGGTGATTCTCGTGACTACTTTTCATCCTTGCATGGTTATAAGGGTACCGATGATAGACTTCTACCTTCTGACTTGTCACTTGCTTCTTATTTGCCTAATGTCTCTGGCTCTCAGTTTTGGCCAAATCAAGAAATACTTGATAATGTGAAGGGTGAAAACATGGAATATGTGGCTGATGCCTCACGTGTGAGTAGTAACATGCATTCCAGTTCTACTGGTGGGATTTCTTTTCAAGATAATCAATTCTTATCAGCAGATAGTGAATTTTCTTCATTTTTTCCTGGTAATGTTTCATACTATCCATGTGAAGAGCAAGTAGCTCGTGTCAAAGGTGAAAGAGATCAACCGATTACACCTTACCAGAACTCTCTTTTTGAAAATTACTCTGAGTTTAATGGAGGCCAAGAGATGAATCAATTAAAAGGAGGCCTAGAGATGAATCAGTTAAATAGTGCTTTTCCTTCCATGGGAAATTATGGTCTTAATTTGTTAGAGTGCGAGGCTAAAGACGCTGATGTATTATCCAACATACATCATTATCAAGGAATGATTGATGGTACTGGTTGTAAATTTTTAAGAGACACAGCTAATTTGAATAGACAAGCCTTAAACAAATCTTTGCCCTATACCCAGGCATCAATTGGCACTGAGGAGCAGTTTGGTTATGTTAAGAATGAAGGGGAGGAAAAAATGATTCAGTGTAGGAATTTTGATTCTCACATTTCAAAAGCTGGCGCTGAGTTGGTTCACAGTAATTTTTTAGAGAAATCCCATGTTGAGGATGATGACTCTGATGTCTGTGTGATTGAAAGCATTAGTCATCCTGCACCAGTGAATCGGTCGACAGACCATTGGAATTCTCATAAGATATCACAGTACTCTCCATATGGTGATTCACAACCTTGCATGTCACGAAGCACAAGGTCGAAGGCCTTTGATGAGCAATATGTATTACGAGCTGCACTACAGGATTTATCTCAGCCAAAGTCAGAAGTTATACCTCCAGATGGATTGATGGCTGTTCCTCTATTAAGACATCAGAGAATTGCTTTGTCATGGATGGTTCAAAAGGAAACATCAAGTTTATACTGCTCAGGGGGAATCCTTGCAGATGATCAGGGACTTGGAAAAACGGTGTCGACTATTGCTTTGATACTGAAGGAAAGACCTCCAGCACTTATAGCTTGCCAAAATCCACAAAAGGGTGAATTAGAAACTCTGAATTTGGATGTCGATGATGATGTCCTTGCCGAGGGTGGTGGAGTGAAGGAAGACAGGCCCAGTGTAAGTCCAATCGAAAACAAGAATTTGTTGATGCAAACAAAGGGAAGGCCATCTGCAGGAACGCTTATTGTTTGTCCCACCAGTGTCCTGCGGCAATGGGCTGAAGAGTTGCAAAATAAGGTAACCAGCAAAGCAAATCTCTCTGTGCTAGTGTACCATGGAAGCAACCGAACCAAAGATCCGTATATGCTGGCCAAGTATGATGTTGTTCTGACAACTTATTCAATTGTCAGCATGGAGGTACCTAAGCAGCCTCTGGTTGACAAAGATGAAGAAGAGAAAGGAAAATCTGATGTTCATGCTGGTCTACCACCTAGTAAGAAGAGGAAATGCCCTTCTTCTAGTAGAAGTGGCAAGAAGGGATTAGACCATGCTTTGCTTGAGGTTTCTGCTCGCCCTTTAGCAAAGGTGGCATGGTTTAGAGTTGTCTTGGATGAGGCCCAGAGTATAAAGAACCACAGAACTCAAGTTGCAAGGGCCTGCTGGGGTCTTCGTGCAAAGCGAAGATGGTGCTTGTCTGGAACTCCTATCCAGAATGCTATTGATGATCTTTATAGTTATTTTAGATTTCTCAGATATGACCCTTATGCTATCTATAATACATTCTGTTCTACTATTAAGATTCCAATAAACAGAAATCCAAACAGAGGGTATAGAAAGCTACAAGCTGTCTTGAAGACAATAATGTTACGCAGGACAAAAGGCACACTTCTTGATGGAGAACCTATTATTACACTGCCACCTAAGTATGTGCAGCTGAAAAAAGTGGATTTTTCAAGAGAGGAGCGTGATTTCTATTCCAGACTGGAGGCTGATTCTCGTGCACAGTTTCAGGAATATGCTAATGCTGGAACTGTTAAGGAAAATTATGTCAACATTCTGTTGATGCTTTTACGTCTTCGACAAGCTTGTGATCATCCTCTGCTTGTTAAGCGCTACAATTCTAACTCTCTATGGAGATCTTCAGTTGAGATGGCAAAGAAACTTCCTTGGGAAAAACGAACATCACTTTTCAACTGTTTGGAGGCTTCCTTGGCTATTTGTGGCATCTGTAATGATCCTCCTGAAGAGGCAGTTGTTTCATCTTGTGGTCATGTCTTTTGTAACCAGTGCATTTCTGAACATCTCACTGGTGATGACAACCAGTGCCCTACTACAAATTGCAAAGCTCAATTGAGTATGTCTTCGGTGTTCTCCAGAGCCGCATTGAACTGCTCTCTTTCTGACCAGGCTAGTAATAGTTTGGTTGATTGCTCTGGTTCTGAAGTGGAGGGTTATGAGCCTTGTTCTCAGAGTCAGCCAATTGATTCTTCAAAAATTAAGGCTGCTCTTGAGGTGTTGAACTCATTGTGTAAGCCACAGGTTAATGCATCAAAAAGTATTTCAATGCAGACTAATTCTGATGAACATAGTGACAGCCATGGGAATTCCTCTGACGCCAACGAGGTGAAATCTTTCAAGGATTTTCCTGAGAGTCAAAATATGTCGGATGGAAGCTCCAATGATTCAATTGTTAGAGAGAAAGCTATTGTATTTTCTCAGTGGACAAGGATGTTGGATTTGCTTGAAGCATGTCTTAAGAATTCTTCAATTCAGTATAGGAGGCTTGATGGCACAATGTCGGTTGTTGCTAGGGATAAAGCCGTTAAAGATTTCAATACTCTCCCAGAGGTAACAGTTATGATTATGTCTTTGAAAGCTGCAAGCCTCGGCCTCAACATGGTAGCTGCCTGCCATGTACTTTTGCTTGATCTATGGTGGAATCCAACAACAGAAGATCAAGCAATTGACAGAGCGCATCGAATTGGGCAGACTCGCCCTGTGACTGTTTTACGGTTGACTGTGAGAGATACAGTTGAAGATCGGATTTTAGCTCTACAGCAAAAGAAGCGGAAGATGGTTGCATCTGCGTTTGGAGAAGATGAAACTGGCGGTCGTCAAAGTCGCCTCACAGTGGATGATTTAAAATACTTGTTCATGATGTGA 3984 0.4192 MADEGFDYSDLVDGDADADDKLFIDLDTVLNVLDEDCDPSESSLEGFSLKNVSPGESSIHDNFQLQSGNSMLCCDHENQGPPSQTCSSSHAVPDGFQQLDPLDGSNEICYTEREGTSGCEVPAQSLEPSAPEPHFNNTSVCGDNLNLNPLWKEKKESQLKHVGEDVKSEYASYSPMIENSDVSFAQYGAFDEDMCEGVSGQPESDSCTSFEMSFMDANGGSHIGTSTNSTICRGFNALGDSRDYFSSLHGYKGTDDRLLPSDLSLASYLPNVSGSQFWPNQEILDNVKGENMEYVADASRVSSNMHSSSTGGISFQDNQFLSADSEFSSFFPGNVSYYPCEEQVARVKGERDQPITPYQNSLFENYSEFNGGQEMNQLKGGLEMNQLNSAFPSMGNYGLNLLECEAKDADVLSNIHHYQGMIDGTGCKFLRDTANLNRQALNKSLPYTQASIGTEEQFGYVKNEGEEKMIQCRNFDSHISKAGAELVHSNFLEKSHVEDDDSDVCVIESISHPAPVNRSTDHWNSHKISQYSPYGDSQPCMSRSTRSKAFDEQYVLRAALQDLSQPKSEVIPPDGLMAVPLLRHQRIALSWMVQKETSSLYCSGGILADDQGLGKTVSTIALILKERPPALIACQNPQKGELETLNLDVDDDVLAEGGGVKEDRPSVSPIENKNLLMQTKGRPSAGTLIVCPTSVLRQWAEELQNKVTSKANLSVLVYHGSNRTKDPYMLAKYDVVLTTYSIVSMEVPKQPLVDKDEEEKGKSDVHAGLPPSKKRKCPSSSRSGKKGLDHALLEVSARPLAKVAWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYAIYNTFCSTIKIPINRNPNRGYRKLQAVLKTIMLRRTKGTLLDGEPIITLPPKYVQLKKVDFSREERDFYSRLEADSRAQFQEYANAGTVKENYVNILLMLLRLRQACDHPLLVKRYNSNSLWRSSVEMAKKLPWEKRTSLFNCLEASLAICGICNDPPEEAVVSSCGHVFCNQCISEHLTGDDNQCPTTNCKAQLSMSSVFSRAALNCSLSDQASNSLVDCSGSEVEGYEPCSQSQPIDSSKIKAALEVLNSLCKPQVNASKSISMQTNSDEHSDSHGNSSDANEVKSFKDFPESQNMSDGSSNDSIVREKAIVFSQWTRMLDLLEACLKNSSIQYRRLDGTMSVVARDKAVKDFNTLPEVTVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVRDTVEDRILALQQKKRKMVASAFGEDETGGRQSRLTVDDLKYLFMM 1327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5385g00010 1327 Pfam SNF2-related domain 601 975 IPR000330 GO:0005524|GO:0140658
Pral5385g00010 1327 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1008 1065 IPR013083 -
Pral5385g00010 1327 Gene3D - 1164 1322 IPR027417 -
Pral5385g00010 1327 Gene3D - 788 910 IPR038718 -
Pral5385g00010 1327 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 566 898 IPR027417 -
Pral5385g00010 1327 SUPERFAMILY RING/U-box 1011 1058 - -
Pral5385g00010 1327 ProSitePatterns Zinc finger RING-type signature. 1029 1038 IPR017907 -
Pral5385g00010 1327 Gene3D - 670 758 IPR038718 -
Pral5385g00010 1327 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 671 756 - -
Pral5385g00010 1327 SMART ring_2 1014 1052 IPR001841 -
Pral5385g00010 1327 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 780 910 - -
Pral5385g00010 1327 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 906 1326 IPR027417 -
Pral5385g00010 1327 Gene3D - 551 645 IPR038718 -
Pral5385g00010 1327 Pfam Helicase conserved C-terminal domain 1171 1269 IPR001650 -
Pral5385g00010 1327 CDD SF2_C_SNF 1172 1279 - -
Pral5385g00010 1327 SMART ultradead3 577 875 IPR014001 -
Pral5385g00010 1327 MobiDBLite consensus disorder prediction 753 786 - -
Pral5385g00010 1327 SMART helicmild6 1186 1269 IPR001650 -
Pral5385g00010 1327 MobiDBLite consensus disorder prediction 753 771 - -
Pral5385g00010 1327 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1165 1322 IPR001650 -
Pral5385g00010 1327 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 493 1326 - -
Pral5385g00010 1327 CDD DEXDc_SHPRH-like 581 898 - -
Pral5385g00010 1327 Pfam Zinc finger, C3HC4 type (RING finger) 1014 1051 - -
Pral5385g00010 1327 ProSiteProfiles Zinc finger RING-type profile. 1014 1053 IPR001841 -
Pral5385g00010 1327 MobiDBLite consensus disorder prediction 1127 1149 - -
Pral5385g00010 1327 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 596 860 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5385g00010 Pral-Chr5385 54597 64195 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5385g00010 464 1326 RAD5 or RAD16-like Gene Family AT1G61140 59.505 0.0 971
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pral5385g00010 SNF2_N 3.9e-69 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5385g00010 - - lang:109332935 1557.35