Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5378g00010 ATGGCGAAACTATCACGGAAGAACAATGCCAGCAGCAAATTGATCAGCAACCACCTTGGCGTCACTAACACGGGGGTGACCACGAAAGTGAAACGAACAAGAAGAAGTGTCCCCAGAGACTCTCCTCCTCAACGCAGCTCTGTATACCGAGGAGTCACTAGACACCGGTGGACTGGCCGGTACGAAGCTCACTTGTGGGACAAGAATTGTTGGAACGAGTCGCAGAACAAGAAGGGAAGACAAGTATATCTGGGTGCTTATGACGATGAAGAAGCAGCAGCACATGCTTATGATTTAGCAGCATTGAAATACTGGGGTCAAGACACGATCCTTAACTTTCCGTTGGCAACGTATGAGAACGAAATGAGAGAAATGGAGGGTCAATCGAGGGAAGAGTATATTGGATCGTTAAGGAGGAAAAGCAGTGGTTTTTCCCGCGGAGTTTCTAAGTACAGAGGCGTTGCCAGACATCATCACAATGGAAGATGGGAAGCTCGGATTGGCAGAGTTTTCGGCAATAAATATCTGTATCTTGGTACTTATGCTACTCAAGAAGAAGCTGCCACGGCTTATGATATGGCGGCTATAGAATACCGTGGCCTTAACGCCGTCACCAACTTCGATCTCAGCCGTTATATAAAGTGGCTTAAGCCTAATTCCAACGGCAACAATATTATTAATCTTAGCGATCAATCTAACTGTGATCCTAACGGTAATGTGGCAACCTTAACGACATCAAACCCTACTCAAGAGCATAGGTCCAGCTTCTTCCACAACGTCCAGCTTGATCAGGACTCGTTCGACGTTATTAATGGCGGAGAAGAAGGCACGCTGACTCAGCCCCATCCGGCAAACACGGCGACATCTGCCACGTCAGCTCTAGGTTTGCTGCTTCAGTCGTCCAAGTTCAAGGAAATGGTGGAGATGACGTCCACGGCAGATTTGTCGGCGCCGGAGTCCGAGATGCCGACGCAGTGCAGGTTTCCCGATGATATTCAGACATACTTTGAGTGTGAAGACTCCAACATGTACAGTAAGGGGGAAGGGGATGATCATTTCCTGTTCAGCGATCTCAACTCATTCGTGCCTCCTCTGTTCCACTGTGATGACTTTGAAGCCTGA 1122 0.4822 MAKLSRKNNASSKLISNHLGVTNTGVTTKVKRTRRSVPRDSPPQRSSVYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQVYLGAYDDEEAAAHAYDLAALKYWGQDTILNFPLATYENEMREMEGQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYIKWLKPNSNGNNIINLSDQSNCDPNGNVATLTTSNPTQEHRSSFFHNVQLDQDSFDVINGGEEGTLTQPHPANTATSATSALGLLLQSSKFKEMVEMTSTADLSAPESEMPTQCRFPDDIQTYFECEDSNMYSKGEGDDHFLFSDLNSFVPPLFHCDDFEA 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5378g00010 373 Gene3D AP2/ERF domain 48 116 IPR036955 GO:0003700|GO:0006355
Pral5378g00010 373 Gene3D AP2/ERF domain 149 210 IPR036955 GO:0003700|GO:0006355
Pral5378g00010 373 SMART rav1_2 48 120 IPR001471 GO:0003700|GO:0006355
Pral5378g00010 373 SMART rav1_2 150 214 IPR001471 GO:0003700|GO:0006355
Pral5378g00010 373 Pfam AP2 domain 149 200 IPR001471 GO:0003700|GO:0006355
Pral5378g00010 373 Pfam AP2 domain 47 106 IPR001471 GO:0003700|GO:0006355
Pral5378g00010 373 SUPERFAMILY DNA-binding domain 47 115 IPR016177 GO:0003677
Pral5378g00010 373 FunFam AP2-like ethylene-responsive transcription factor 149 210 - -
Pral5378g00010 373 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 23 276 - -
Pral5378g00010 373 SUPERFAMILY DNA-binding domain 149 210 IPR016177 GO:0003677
Pral5378g00010 373 PRINTS Ethylene responsive element binding protein signature 190 210 IPR001471 GO:0003700|GO:0006355
Pral5378g00010 373 PRINTS Ethylene responsive element binding protein signature 49 60 IPR001471 GO:0003700|GO:0006355
Pral5378g00010 373 MobiDBLite consensus disorder prediction 1 31 - -
Pral5378g00010 373 FunFam AP2-like ethylene-responsive transcription factor 47 116 - -
Pral5378g00010 373 CDD AP2 149 210 IPR001471 GO:0003700|GO:0006355
Pral5378g00010 373 MobiDBLite consensus disorder prediction 1 48 - -
Pral5378g00010 373 ProSiteProfiles AP2/ERF domain profile. 48 114 IPR001471 GO:0003700|GO:0006355
Pral5378g00010 373 ProSiteProfiles AP2/ERF domain profile. 150 208 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5378g00010 Pral-Chr5378 197059 199622 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5378g00010 44 268 AP2-EREBP Transcription Factor Family AT5G57390 54.959 1.32e-90 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Pral5378g00010 AP2 3.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5378g00010 K09285 - gmx:100804555 513.457