Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5378g00006 ATGTCTATCGCCATCTTCATGCTGTGTTTGTACCTGAACATAGCTTATTCCGACAAGAACATGAGTGATGTCGGATTCATGTTTGATGGATTCTTCAAGTTGGGAGGAGCTAGTGATCCGGAGCTCAAAACTTCCAACATGTCAGCACAAGAAATACATGCCGATGGCGGCCTAAGTGAAGCTGGGCAAGTCTTTTACAATCTTCCTCTTCAATTCAAGAATTCCAGTACTACTTCTGCCTTCTCTTTCTCCACCACTTTCATCTTCGCAGTATTAACCACCGATCCTAGATTTCACGGCCATGGACTTGCCTTCGCTATCTCGCCTACTAGATTTATTCCTGGAGCTCAGCCAAACCAATATCTTGGCCTCTTCAATTCCACCTCCGATGGTCAAAGTTCCAATCATATTGTGGCATTAGAGCTTGACACTGACCAGGACTTTGAGATTAGTGATATTGATGATAACCATCTTGGTATTGATATCAATAGCTTGAAATCCGCCAATCGATCTTCTGCAGGTTACTATACTGATCGTGGTCTTTTCAGAAGGATAGATCTCTCAAGTGGAGAACCGTTTCAGATTTGGGTTGAATATAATAGTACAAATCAGAAACTCAGCGTTACAATTCATCGAATAAACATGCCTAAACCTGAGACCCCTCTTGTCACACTGAAAAGAGATCTTTCTTCTTGTTTCTTTGAGTTTATGTATGTTGGATTCACATCCTCTAGCGGGTCAAATTCATCTCATTATATATTGGGTTGGAGTTTCAGGATGAACGGTCAAGCTCAGGAGATTCATCTTTCTCGCCTTCCTGACATTCCTGGACTTTTAGATCCAAATGACATGGGCGGAGGTGGGAGAGTCCACAAGAAAATATTGATAGCTATATTATCACTAGTGGGTGCGGTTATCTTTCTAATCTTGATCTATGGTGTGGTTATGATTGTAAGGAGAAGAAAATTTATTCAAGTTCTTGAGGATTGGCAAATCTTGTACGGGCCTCATAGGTTCACTTACAAGGACTTATTCATTGCAACAAAAGGGTTTAGAGAGGGTCAACTTCTTGGTAGAGGTGGTTTTGGCAGGGTATACAAAGGAATTCTACCATTTTCCAATGTTCAAATTGCAGTGAAAAGAATTTCTCATGATTCAAAACAAGGGATGAAAGAATTCGTGGCAGAAATCTCAACCATCGGCCGTCTCAGGCATCCAAACTTGGTAAGGCTTCTTGGCTACTGCAGAAAAAGAAAAGAACTATTCTTAGTCTATGACTATATGCCTAACGGAAGTCTAGACAAGTTCCTTTACCGATTGCCAAACAACAGCATACTCAACTGGAAACACAGATTCAAGATCATCAAAGATGTGGCATCTGCACTCTTATATCTTCACCAGCAATGGGTTCAAGTTGTCGTCCACCGAGACATCAAATCAGCCAATGTACTGATTGACAATGACATGAATGCTAGACTTGGAGATTTTGGCCTCGCCAAGCTATGTGACCATGGAAATGATCCTCAAACATCTCATGTTGCAGGAACTCCAGGCTACATAGACCCAGAAATTGTGCATAGTGGAAAATCAAACACACGTACTGACATATATTCATTTGGGGTTTTGCTGTTAGAGATTGGTTGTGGAAGAAAGCCGGTCGAAACTCAAACTTCGCCAGAGAAAGTGTTGTTAATCGAATGGGTTTTGGATTGCTGGGACAAAGGAGACATTTGTGAAGTAGTGGATAGCAGATTGGGGGGTGAATATGTGGTGGATGAAGCTAAATTGGTGCTTACACTTGGCTTGCTTTGTTCACATCCTATTGCTTCAGCTAGGCCTACTATTTCTAGTATTGTGCAATTCTTAGATGGAGATTCTCAGTTGCCTGATAGCTTATTGGATTTAATCAAGTCCAGAAATTTTAGTGGTTGGTCTGGTCAAGCCAGTTCTTCATTATCCTCTAATTTTCCTACTACCCAAACTTCTATTGCTTCTTTGACTTTTACAGAACCATTTGCCTCCTCCGGCCGCTAA 2034 0.4135 MSIAIFMLCLYLNIAYSDKNMSDVGFMFDGFFKLGGASDPELKTSNMSAQEIHADGGLSEAGQVFYNLPLQFKNSSTTSAFSFSTTFIFAVLTTDPRFHGHGLAFAISPTRFIPGAQPNQYLGLFNSTSDGQSSNHIVALELDTDQDFEISDIDDNHLGIDINSLKSANRSSAGYYTDRGLFRRIDLSSGEPFQIWVEYNSTNQKLSVTIHRINMPKPETPLVTLKRDLSSCFFEFMYVGFTSSSGSNSSHYILGWSFRMNGQAQEIHLSRLPDIPGLLDPNDMGGGGRVHKKILIAILSLVGAVIFLILIYGVVMIVRRRKFIQVLEDWQILYGPHRFTYKDLFIATKGFREGQLLGRGGFGRVYKGILPFSNVQIAVKRISHDSKQGMKEFVAEISTIGRLRHPNLVRLLGYCRKRKELFLVYDYMPNGSLDKFLYRLPNNSILNWKHRFKIIKDVASALLYLHQQWVQVVVHRDIKSANVLIDNDMNARLGDFGLAKLCDHGNDPQTSHVAGTPGYIDPEIVHSGKSNTRTDIYSFGVLLLEIGCGRKPVETQTSPEKVLLIEWVLDCWDKGDICEVVDSRLGGEYVVDEAKLVLTLGLLCSHPIASARPTISSIVQFLDGDSQLPDSLLDLIKSRNFSGWSGQASSSLSSNFPTTQTSIASLTFTEPFASSGR 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5378g00006 677 Gene3D - 26 272 - -
Pral5378g00006 677 Pfam Legume lectin domain 51 272 IPR001220 GO:0030246
Pral5378g00006 677 PANTHER - 50 626 - -
Pral5378g00006 677 Gene3D Phosphorylase Kinase; domain 1 336 427 - -
Pral5378g00006 677 ProSiteProfiles Protein kinase domain profile. 351 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5378g00006 677 FunFam Lectin-domain containing receptor kinase A4.3 336 427 - -
Pral5378g00006 677 FunFam L-type lectin-domain containing receptor kinase S.4 428 634 - -
Pral5378g00006 677 ProSitePatterns Protein kinases ATP-binding region signature. 357 380 IPR017441 GO:0005524
Pral5378g00006 677 Pfam Protein kinase domain 352 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5378g00006 677 CDD lectin_legume_LecRK_Arcelin_ConA 59 262 IPR001220 GO:0030246
Pral5378g00006 677 Gene3D Transferase(Phosphotransferase) domain 1 428 635 - -
Pral5378g00006 677 SUPERFAMILY Concanavalin A-like lectins/glucanases 58 276 IPR013320 -
Pral5378g00006 677 SUPERFAMILY Protein kinase-like (PK-like) 333 642 IPR011009 -
Pral5378g00006 677 CDD STKc_IRAK 357 624 - -
Pral5378g00006 677 ProSitePatterns Serine/Threonine protein kinases active-site signature. 473 485 IPR008271 GO:0004672|GO:0006468
Pral5378g00006 677 SMART serkin_6 351 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5378g00006 Pral-Chr5378 112238 114435 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5378g00006 62 677 Receptor kinase-like Gene Family AT4G29050 56.410 0.0 726
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Pral5378g00006 Pkinase 1.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5378g00006 - - pcin:129301411 1065.06