Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5375g00027 ATGGGGAGACGTAGGACTCTACTACAAGTTAAAAGCGAAGGCTTTGAGCCTCCTTTGGAGCAACCACCACCGTTCTATCTTTCTCAGCCACGCCTTCCATCTTCTTCACCGCCTAATTTTGGATCTGGTAGTGGTCTCTTGAATTTAAACGACAAGGTGAGTCCTAGCATGCTACTTGTCATCATAATTCTGGCCATTGTTTTCTTCGTTTCTGGGTTGATTCACCTCCTAGTTAGATTCCTGTGGAGACCTCAATCCAGAGACCCAGATGATTTGGATAATGTGTCTGCTCTTCAAGGTCAACTACAGCAGCTTTTTCACCTTCATGATGCTGGTGTTGACCAGTCCTTCATAGATAACACCCTCCCTGTGTTCCATTACAAAGCCATCATTGGATTGAAAGACCCATTTGATTGTGCTGTGTGCTTGTGTGAATTTGACGCTGACGATAAGCTCAGATTGTTACCCAAATGCAGCCACGCCTTTCACATGGAGTGTATTGATACTTGGCTCTTGTCTCACTCAACTTGCCCTCTCTGTAGAGCTTGCTTGCTCTCTGATTTCTCTCCCATAAACGCTTCTTCTCCTCCTTTCGTGTTCGTTCTAGAATCTGGGAGTGACAGTTCCAGAGAGATTGTCCCAGAAAGAGAGAGTACAGTTGGTAGGACCAGTTCTGTGGTTGGAGATAACGAACTTGGCTTGACCCATGTGGATTTGTCACACAAATCTTTTGATTTGAGTTCAGAAGCTAATCCTGATCAGATTGCAGTTGGGGAATCACATGAGAAAGTGGTCACTGTGAAGCTGGGAAAGTTCAGGAATGTGGACAGTGTTGGTGAAGGAAGCAGTACAGACATGGGAGAAGCTCGAAGGTGTCTTTCTATGGGGTCATTTGCTTATGTTATGGACGAGAATTCTTCACTCCAAGTACCAGTAAGAGCGACGATGAAGAAGCAGTCAAGTAAGAAACGTGCTTTACCTTTAACGCCAGGACGAAGGATTGCCATGTCAGAGTGCGACTGTGAGTCCACGAGAGATTTCCAATTCACGGGTTTTGACGCAGTAAAAGGTGTTGAGACTTCTTCTGAAACTGCAAGTATCGAGAGAAGCAGAAAAGAGAGCTTTTCGGTTTCAAAGATTTGGCTTCGGGGAAAGGCAGAGAAGCCGCAAGCCATGGCTGATTCCTCAAGGAGGGCTGTTTCGTTTCGATTCTCTGCACAGAGTAACGAGGTTGCGAGGGATGATTCGAAGGCAAAGAATGGGAAATCTGAGATGGAGTTTGGGAAGTGGGAAAATGATGATGAAAACCAGAGCTGTTACAGTGTGGATTCTCAGGGCAGAGCACCCTCTTTTGCTCGAAGGACTCTGCTTTGGCTTACTGGAAAACAGAACAAGGTTGTTCATTCATCTTCTGATTCAAACTTCTAG 1428 0.4552 MGRRRTLLQVKSEGFEPPLEQPPPFYLSQPRLPSSSPPNFGSGSGLLNLNDKVSPSMLLVIIILAIVFFVSGLIHLLVRFLWRPQSRDPDDLDNVSALQGQLQQLFHLHDAGVDQSFIDNTLPVFHYKAIIGLKDPFDCAVCLCEFDADDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRACLLSDFSPINASSPPFVFVLESGSDSSREIVPERESTVGRTSSVVGDNELGLTHVDLSHKSFDLSSEANPDQIAVGESHEKVVTVKLGKFRNVDSVGEGSSTDMGEARRCLSMGSFAYVMDENSSLQVPVRATMKKQSSKKRALPLTPGRRIAMSECDCESTRDFQFTGFDAVKGVETSSETASIERSRKESFSVSKIWLRGKAEKPQAMADSSRRAVSFRFSAQSNEVARDDSKAKNGKSEMEFGKWENDDENQSCYSVDSQGRAPSFARRTLLWLTGKQNKVVHSSSDSNF 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5375g00027 475 CDD RING-H2_EL5-like 138 181 - -
Pral5375g00027 475 MobiDBLite consensus disorder prediction 17 31 - -
Pral5375g00027 475 SMART ring_2 139 180 IPR001841 -
Pral5375g00027 475 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 187 IPR013083 -
Pral5375g00027 475 MobiDBLite consensus disorder prediction 411 447 - -
Pral5375g00027 475 SUPERFAMILY RING/U-box 120 190 - -
Pral5375g00027 475 ProSiteProfiles Zinc finger RING-type profile. 139 181 IPR001841 -
Pral5375g00027 475 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 50 381 - -
Pral5375g00027 475 MobiDBLite consensus disorder prediction 411 433 - -
Pral5375g00027 475 Pfam Ring finger domain 138 181 IPR001841 -
Pral5375g00027 475 MobiDBLite consensus disorder prediction 12 38 - -
Pral5375g00027 475 FunFam RING-H2 finger protein ATL46 100 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5375g00027 Pral-Chr5375 274345 279763 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5375g00027 42 471 C3H Transcription Factor Family AT2G18650 49.554 3.66e-106 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5375g00027 - - qsa:O6P43_022263 600.897