Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5375g00019 ATGGGATTTGCCATCGCAAGCCTCTTCGCAGCTGCATCAGCCGCTTCTGGAACTGCCACCTTTTACACTGAATACGTTCCTTCTGCATGCTATGGATACCAAGACCAGGGAACTATGATAGCAGCAGCGGGCGACTCCCTCTGGAACAATGGAGCCGCCTGCGGAAAAAGGTACAGAATCAGGTGCACCGGTGGTACCAATCAGGGCGTGGCTCAGCCTTGCCGGAGCGGAACCGTCACCGTCAAGATTGTCGATCGCTGCCCTTCGCCGGGATGCCAAGCAACCATCGATCTCTCTCGCCAAGCTTTTGCTGCTATTGCTGACCCTGATGAAGGCAAAATCCGCATCGAATACACCCAGGTCTGA 366 0.5519 MGFAIASLFAAASAASGTATFYTEYVPSACYGYQDQGTMIAAAGDSLWNNGAACGKRYRIRCTGGTNQGVAQPCRSGTVTVKIVDRCPSPGCQATIDLSRQAFAAIADPDEGKIRIEYTQV 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5375g00019 121 SUPERFAMILY Barwin-like endoglucanases 5 121 IPR036908 -
Pral5375g00019 121 FunFam Barwin-related endoglucanase 14 120 - -
Pral5375g00019 121 SMART dpbb_1 40 118 IPR007112 -
Pral5375g00019 121 CDD DPBB_EG45-like 20 119 - -
Pral5375g00019 121 PANTHER EG45-LIKE DOMAIN CONTAINING PROTEIN 1-RELATED 5 120 IPR044206 GO:0009627|GO:0048046
Pral5375g00019 121 Gene3D - 4 121 IPR036908 -
Pral5375g00019 121 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 17 121 IPR007112 -
Pral5375g00019 121 Pfam Lytic transglycolase 41 118 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5375g00019 Pral-Chr5375 229461 230105 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5375g00019 39 120 Expansin Gene Family AT2G45110 37.634 2.24e-10 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5375g00019 - - csin:114316656 183.341