Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5375g00003 ATGGGGATTGAGAGAGGAGGCCTTAAGGGCTTACGTGGCGGGTGGAGCGTCGCTGCTAAGCCATGCGATTCCTGCAAATCGGCGGCCTCCGCCGTGTTCTGCCGCGCCGATTCCGCCTTCCTCTGCATGGCCTGTGACACCAGAATTCACTGCGGTAATAAGCTCTCTTCCCGCCATGCGCGTGTTTGGATGTGCGAGGTTTGCGAGCAGGCCCCTGCTTCCGTCACGTGCAAGGCTGACGCCGCTGCTCTCTGCGTCACCTGCGATTCCGACATCCACTCCGCCAACCCCCTCGCTCGCCGCCACGAGCGTGTACCGGTGGAGCCCTTTTATGACTCCGCTGAGGTGGTGGCGAAATCCTCTGGCGCCGTTGCTGCTTTCAACTTCTTCGTCCCCAGCGATAGTGGAATTTGCTCCGATGGGTTCCAAACCGACGATCCCGAACCAGTTCCGTGGATGGTGCCTAACCAGAATTTCAATTCCAAGGTCGTGGGTGCCCCGGAAGTGAAGTCCGGCGACATGTTCTTCACGGAAATGGATCCATTTGTGGAATTCGAGTACTCCAATTCTTATCAGAACAACAACAATCACGGCGCGGCAAACGACAGCGTTGTGCCGGTTCAAAACAAACCTGTTACGGCTCCGATGATCAATCACTCGGAGAATTGCTTCGATATTGATTTTTGCAGGTCGAAGCTTTCTTCTTTTAGCAGCTACCCAAGCCAAAGTGTCTCGTCGTCTTCGCTTGATGTTGGGGTTGTGCCAGAGTCAGTGTCAGAAATGTCGTTCTCCTTGGGGCGAAACATGACCACCAGCTCCGAATCAGGCGGAATCGGGTCGGCGGGAAGCAACCAGGCGACCCAGCTGGGCGGGATGGACCGGGAAGCGAGGGTGTTGAGGTACAGAGAGAAAAGAAAGAACCGGAAGTTCGAGAAAACCATCCGGTACGCGTCGAGGAAAGCATACGCGGAGACCCGACCCAGGATCAAGGGTCGGTTCGCTAAACGGAGCGAAACCGAGTCGGAGGTGGACCGGGTGTACAGCCCCGTTAGCTCGGGGGGACTCATGATGGAGGCTCAGTACGGCGTCGTACCGTCGTTTTAA 1104 0.567 MGIERGGLKGLRGGWSVAAKPCDSCKSAASAVFCRADSAFLCMACDTRIHCGNKLSSRHARVWMCEVCEQAPASVTCKADAAALCVTCDSDIHSANPLARRHERVPVEPFYDSAEVVAKSSGAVAAFNFFVPSDSGICSDGFQTDDPEPVPWMVPNQNFNSKVVGAPEVKSGDMFFTEMDPFVEFEYSNSYQNNNNHGAANDSVVPVQNKPVTAPMINHSENCFDIDFCRSKLSSFSSYPSQSVSSSSLDVGVVPESVSEMSFSLGRNMTTSSESGGIGSAGSNQATQLGGMDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRSETESEVDRVYSPVSSGGLMMEAQYGVVPSF 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5375g00003 367 ProSiteProfiles CCT domain profile. 294 336 IPR010402 GO:0005515
Pral5375g00003 367 CDD Bbox1_BBX-like 65 107 - -
Pral5375g00003 367 CDD Bbox1_BBX-like 21 64 - -
Pral5375g00003 367 Pfam CCT motif 294 336 IPR010402 GO:0005515
Pral5375g00003 367 SMART bboxneu5 65 107 IPR000315 GO:0008270
Pral5375g00003 367 SMART bboxneu5 17 64 IPR000315 GO:0008270
Pral5375g00003 367 MobiDBLite consensus disorder prediction 269 290 - -
Pral5375g00003 367 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 21 348 IPR045281 GO:0009909
Pral5375g00003 367 ProSiteProfiles Zinc finger B-box type profile. 17 64 IPR000315 GO:0008270
Pral5375g00003 367 ProSiteProfiles Zinc finger B-box type profile. 60 107 IPR000315 GO:0008270
Pral5375g00003 367 Pfam B-box zinc finger 62 107 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5375g00003 Pral-Chr5375 63267 65096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5375g00003 1 367 C2C2-CO-like Transcription Factor Family AT5G57660 54.787 5.50e-124 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Pral5375g00003 zf-B_box 4.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5375g00003 - - gmx:100805693 491.115