LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral5373g00001	ATGGGCTTTGCAAGCAGTGTAGGCAAGTACAGACTTGGGCGTACGATTGGAGAAGGGACATTTGCTAAGGTTAAGATTGCTGTTAACAGCCTCAATGGTCAATATGTGGCGATCAAGATCCTTGATAAGAAAATGGTCATGGAGAGCCATCTCAAGTATCAGGTTCAAAGAGAGATAAGAACAATGAAGCTTCTGAACCATCCCAATATTGTAAGAATCCATGAGGTTCTTGGCACGAAGACGAAGATATATATTGCGATGGAGTATGTATCAGGAGGACAACTATCAGACAAGTTGTCTTATGCCGGAAAGTTGAATGAAAATGAAGCAAGAAAACTTTTCCAGCAACTTATTGATGCTGTAGATTACTGCCATAACAAAGGAGTTTACCATAGAGATCTTAAGCCAGCAAACTTGCTTCTCGACAGCAAAGGGAATCTCAAGCTGTCTGATTTTGGACTGAGCGCGACGAGAAAGCCTGATAATGTTCTAACAACTGCATGTGGTTCCCCAAGCTATGTGGCACCTGAGCTTCTGTGGAACAAGGGCTACGACGGAGCAGCTGCTGATGTTTGGTCATGTGGGGTTATACTTTTTGAATTACTCGCAGGTTATCTTCCTTTTGATGACCACAACTTGATGAACTTGTATAAGAAGATAAGTAGAGCAGAGTACACGTGTCCACCATGGTTTACAGTAAGTCAAAGGAAACTAATTGCCAAAATACTTGAACCACGAGTTGCAAAGCGAATAAATATGCCAGAGATCATGGAAGATGGATGGTTCCAAACAGATTATGTGCCGGCTTGTGAATCGGGGTGTGATCAGAACATTCACATGGATGATGTTAATGCTGCTTTCGATTCAGTTGAGGAGAATATCTTAGAGGCAACAATCCCCACGTCCTCAAGTTTCATTAATGCTTTCCAACTGATAGCCATGTCTCAGGACCTTGATCTATCAGGCCTTTTCGAAGAACAGGATCAAATGCAGAAAACAAGACTAGGATCCAAACACACAACATCTGAAACCATAGAGAAGATAGAAACTGCTGCAACAGACGTGAAGCTGTCAATAGAAAAAATGAACAACTTCACGTTAAAAATGCACCCTAAAGGAACGATGACTAGATGTTCCAGATCATATTATGACCTATCAGCTAAGGTGATTGAAGTTACTCCAGCTCACTGTGTTGTTGAAATATCAAAATCTACAGGAGATTTAAGAACCTACAAAAAATTTTGTGAAAGTCTATCCAGTCTACTGACAGAAAATTCTGCTGCATCATCACAATCCCACGAGTCTGTGGAACAATGCATCAAGGGAAAAGATAACCAAGATGCTGGCCGCTCTGAAGAGGCAAACTGTGAAGATAACAAAGGCATTCATGAACATACATCTGCTTGA	1407	0.4129	MGFASSVGKYRLGRTIGEGTFAKVKIAVNSLNGQYVAIKILDKKMVMESHLKYQVQREIRTMKLLNHPNIVRIHEVLGTKTKIYIAMEYVSGGQLSDKLSYAGKLNENEARKLFQQLIDAVDYCHNKGVYHRDLKPANLLLDSKGNLKLSDFGLSATRKPDNVLTTACGSPSYVAPELLWNKGYDGAAADVWSCGVILFELLAGYLPFDDHNLMNLYKKISRAEYTCPPWFTVSQRKLIAKILEPRVAKRINMPEIMEDGWFQTDYVPACESGCDQNIHMDDVNAAFDSVEENILEATIPTSSSFINAFQLIAMSQDLDLSGLFEEQDQMQKTRLGSKHTTSETIEKIETAATDVKLSIEKMNNFTLKMHPKGTMTRCSRSYYDLSAKVIEVTPAHCVVEISKSTGDLRTYKKFCESLSSLLTENSAASSQSHESVEQCIKGKDNQDAGRSEEANCEDNKGIHEHTSA	468

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral5373g00001	468	FunFam	Non-specific serine/threonine protein kinase	4	302	-	-
	Pral5373g00001	468	Pfam	NAF domain	304	361	IPR004041	GO:0007165
	Pral5373g00001	468	MobiDBLite	consensus disorder prediction	437	468	-	-
	Pral5373g00001	468	Gene3D	Phosphorylase Kinase; domain 1	4	94	-	-
	Pral5373g00001	468	ProSiteProfiles	NAF domain profile.	301	325	IPR018451	GO:0007165
	Pral5373g00001	468	Gene3D	Transferase(Phosphotransferase) domain 1	95	286	-	-
	Pral5373g00001	468	CDD	CIPK_C	307	422	-	-
	Pral5373g00001	468	ProSitePatterns	Protein kinases ATP-binding region signature.	16	39	IPR017441	GO:0005524
	Pral5373g00001	468	FunFam	Non-specific serine/threonine protein kinase	301	426	-	-
	Pral5373g00001	468	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	129	141	IPR008271	GO:0004672\|GO:0006468
	Pral5373g00001	468	FunFam	Non-specific serine/threonine protein kinase	2	89	-	-
	Pral5373g00001	468	SUPERFAMILY	Protein kinase-like (PK-like)	8	316	IPR011009	-
	Pral5373g00001	468	SMART	serkin_6	10	262	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral5373g00001	468	MobiDBLite	consensus disorder prediction	426	468	-	-
	Pral5373g00001	468	Pfam	Protein kinase domain	10	262	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral5373g00001	468	Gene3D	Kinase associated domain 1, KA1	302	425	-	-
	Pral5373g00001	468	PANTHER	CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED	8	417	-	-
	Pral5373g00001	468	ProSiteProfiles	Protein kinase domain profile.	10	262	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral5373g00001	Pral-Chr5373	3741	6857	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral5373g00001	5	418	CBL-interacting serine-threonine protein kinases	AT1G01140	49.881	7.87e-146	422

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CAMKL-CHK1	Pral5373g00001		Pkinase	3.3e-70	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral5373g00001	-		-	gmx:100786097	678.707