Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5372g00023 ATGGGTCGAGCTCCTTGCTGTGACAAGGCTAACGTCAAGAAAGGACCTTGGTCCCCCGAAGAAGATGCTAAACTCAAAACTTATATCGAAAAGTATGGAACTGGAGGCAACTGGATCGCTCTTCCTCAAAAAATTGGGCTCAAGAGATGTGGAAAGAGTTGCAGACTGAGATGGTTAAATTATCTAAGGCCTAATATCAAGCATGGTGGGTTTACTGAAGAAGAAGACAACATCATCTGTAGCCTTTACATTAGCATCGGAAGCAGGTGGTCCATAATCGCAGCACAGCTACCGGGAAGGACAGACAATGACATAAAGAACTACTGGAACACCAGATTGAAGAAGAAGTTACTGGGAAGGAGAAAACAATCGTCTAGTTTCAATAATCCACGAGACAGAAACGGATCAGGAAACGAACCAGATGATTCAAATGCTCTAAGCAACTCGGCTCTCGAACGCCTTCAACTTCATATGCAACTTCAAGGCCTCCATCAAAACCAAAACTCTTTCTCTAATTTCTACAACAATCCTGCACTGTGGCCCACCACTAAGCTCCATCATCTGATGAATTGTAACAATAAAAACCCTGATCACCAGTCAACAAAGCAGCAGCAATTCTACAAACCCACTGTTCCATCCAGTACGGATGATACATCTCTTCAACAAGAACATGAAAAGATCAATAGTTCTTCACAGGTTGACATGTCATCGGTTCCTTTCATGGCCTCGGGGATTGATCAAATGGACTCTAATAGTATGGCAACGGTGAGACTGCAAGAGGGAGTTCATCAGCAGCAACCTAATAATGTGGAGAATCAGCAAGTTTCCGCACTTCAAGCCGAGTTGCATGAGATTCTCAGCAATAATAACAACAGATCAATGAGCTACAATATGCCACAGGATCAAGATCAGATGGCTGATTTTGATTGTTTTGCAGAGATGAACTCGAATGATTCGAAGGACAGCTTGATGAATATGTGGTGGTCCAATGATTTGATGGCCAAATCAGCATCTTCCAGCTCTTGGTGTTCAAGTACAAGCACAAGTACTCCTGTTCTTCAGCCAGAAGGGATGTTTCAAGATAATTATGAACTCGTGGCCGGTTATAGTTTGTAG 1116 0.4292 MGRAPCCDKANVKKGPWSPEEDAKLKTYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFTEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGRRKQSSSFNNPRDRNGSGNEPDDSNALSNSALERLQLHMQLQGLHQNQNSFSNFYNNPALWPTTKLHHLMNCNNKNPDHQSTKQQQFYKPTVPSSTDDTSLQQEHEKINSSSQVDMSSVPFMASGIDQMDSNSMATVRLQEGVHQQQPNNVENQQVSALQAELHEILSNNNNRSMSYNMPQDQDQMADFDCFAEMNSNDSKDSLMNMWWSNDLMAKSASSSSWCSSTSTSTPVLQPEGMFQDNYELVAGYSL 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5372g00023 371 Gene3D - 70 139 - -
Pral5372g00023 371 CDD SANT 71 113 IPR001005 -
Pral5372g00023 371 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Pral5372g00023 371 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Pral5372g00023 371 FunFam Transcription factor RAX3 7 68 - -
Pral5372g00023 371 FunFam Transcription factor MYB36 70 138 - -
Pral5372g00023 371 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Pral5372g00023 371 MobiDBLite consensus disorder prediction 193 219 - -
Pral5372g00023 371 CDD SANT 16 62 IPR001005 -
Pral5372g00023 371 PANTHER OS09G0431300 PROTEIN 1 305 - -
Pral5372g00023 371 Gene3D - 7 68 - -
Pral5372g00023 371 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Pral5372g00023 371 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Pral5372g00023 371 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Pral5372g00023 371 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Pral5372g00023 371 SMART sant 13 64 IPR001005 -
Pral5372g00023 371 SMART sant 67 115 IPR001005 -
Pral5372g00023 371 MobiDBLite consensus disorder prediction 122 145 - -
Pral5372g00023 371 MobiDBLite consensus disorder prediction 119 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5372g00023 Pral-Chr5372 189161 190684 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5372g00023 1 207 MYB Transcription Factor Family AT5G57620 72.038 2.11e-102 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral5372g00023 Myb_DNA-binding 4.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5372g00023 K09422 - gmx:100783440 395.971