Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5372g00016 ATGAGCTTCTTCCGTTCTTCTTCTAACACTTCTTTTCATCATCATCCTTCAGATGAAATCGATAACCTTAACCTAGATCTTCTCCTTGAGCTTTCTTCATCTTCTTCTAATTCATCTTCTCCTCCAGCTAATTACAGTATGGAGCCTCGGGTTTTCTCGTGCAACTATTGCCAGAGAAAGTTCTACAGCTCACAAGCTCTGGGAGGTCACCAGAATGCCCACAAGCTGGAGAGGACACTGGCTAAGAAGAGCAGAGAGCTCAGTTCAATGCAGAATTTTGGGCCCTCTGGTCACAGGTCTAGCACTAGCAGCTTCAATAATGGCTCGAACCATCTTGCGCCTGGGGTGGCCTCGCTAAGCCATGGCCAAGCTGGTGGGGTTAGGTATGAAAGAAGAGAGTTTAGCTATGGTGGTTCCAACCCCGCCAGGTCTTCTGGTTATGTTTTGTCCGAAAGTAATGCTGAGCAGGAAGATATGGGTCAACTTGACTTGTCTTTAAGGCTTTAG 507 0.4675 MSFFRSSSNTSFHHHPSDEIDNLNLDLLLELSSSSSNSSSPPANYSMEPRVFSCNYCQRKFYSSQALGGHQNAHKLERTLAKKSRELSSMQNFGPSGHRSSTSSFNNGSNHLAPGVASLSHGQAGGVRYERREFSYGGSNPARSSGYVLSESNAEQEDMGQLDLSLRL 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5372g00016 168 ProSitePatterns Zinc finger C2H2 type domain signature. 54 74 IPR013087 -
Pral5372g00016 168 MobiDBLite consensus disorder prediction 89 168 - -
Pral5372g00016 168 ProSiteProfiles Zinc finger C2H2 type domain profile. 52 79 IPR013087 -
Pral5372g00016 168 FunFam Zinc finger protein 2 29 109 - -
Pral5372g00016 168 MobiDBLite consensus disorder prediction 138 159 - -
Pral5372g00016 168 Gene3D Classic Zinc Finger 34 106 - -
Pral5372g00016 168 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 13 107 IPR044246 GO:0009788
Pral5372g00016 168 SUPERFAMILY beta-beta-alpha zinc fingers 49 79 IPR036236 -
Pral5372g00016 168 MobiDBLite consensus disorder prediction 89 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5372g00016 Pral-Chr5372 138102 138608 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5372g00016 16 87 C2H2 Transcription Factor Family AT5G57520 74.324 1.59e-23 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral5372g00016 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5372g00016 - - gmx:100781826 129.413