Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5372g00015 ATGGAAGCTCCTCCGACGGAATTCATCTTCCGGTCGAGGCTCCCCGACATTTACATTCCAACCCATCTTCCTCTCCACTCCTACGTCTTTGAGAACATATCTCAGGTCAAAGATCGACCCTGCCTTATCAACGGCGACACCGGCGAGATCTTTACCTATGCCGACGTTGAGCTCACCGCCCGCCGTGTCGCCGCTGGACTCAGCAAAATCGGCATCCGACAAGGTGATGTCATCATGCTGGTGCTCCGGAACTGTCCCCAGTTCGCTATGGCCTTCCTGGGAGCCTCCTTCGCCGGCGCGGCGGTAACCACCGCGAACCCCTTATTCACTCCGGCCGAGCTGGCAAAACAAGCCACGGCGTCCAAGTCGAAGCTGATCATAACCCAAGCGGCTTTCGTTGAGAAAATCAAGGATTTCGCGGGTACACATGGCGTTTCGCTCATGTGCATTGATTCTACTTTTCCAGAAAAGGAAGGTATTTTACATTTCTCTCAACTCACCCAAGCCAACGAAGCTGATATGCCGGCCGTCAAGATCAGCCCTGACGACGTCGTGGCACTGCCGTATTCCTCCGGCACCTCCGGCGTCCCGAAGGGTGTGATGCTAACGCACAAGAATCTGGTAACCTTCGGCGCTCAGCTCGTGGACGGCGAAAACCCGAATCAGTACACCACCAGCGACGACTTGCATATCTGTGTGCTTCCATTGTTCCATATCTATGCGCTTAACTCCATTCTGCTCTGTTGTATCCGAGCCGGAGCAGCCATTCTGATCGTGAGCAAATACGACGTCACCACGCTGTTGAGGATGATCGAGACTTACAAGGTGACGATGGCCTCGTTCGTGCCTCCCATCCTATTGAACATCGTGAAGAGTGAGGAAGTTGATCGGTACGACCTGTCGTCCATTAGGATGATCGTCACGGGAGCAGCGCCGGTGAGCATGGAGCTACAAGAAGCTCTGAGGGCTAAGCTTCCACACGCCGTGCTCGGACAGGGATATGGGATGACGGAGGGTGGCCCTATATCGATAAGCCTGGCGTTTGCGAAGGAGCCGGCGGAGATGAAACCGGGTGCGTGCGGGTGCTTGATAAGGAACGCAGAGATGAAGATCGTGGACATTGAGACGGGAGCTTCGCTTCCAAGAAACAAAGCTGGTGAAATCTGCATCAGAGGAAATCAAGTTATGAAAGGGTACTTAAACGACCCGGAGGCGACGAAAACGACGATAGACCCAGAAGGATGGCTTCACACGGGGGACATAGGATACGTAGACGACGATGGGGAAGTGTTCATTGTGGACCGTTTGAAGGAGATCATCAAATACAAAGGCTTCCAGGTGGCTCCTGCTGAGCTGGAGGCTCTCCTCGTCTCCCACCCTCTCATCTCTGATGCTGCCGTTGTTCCGATGAAAGATGAGGCTGCGGGAGAGCTTCCAGTGGCATTTGTGGTGAGGTCAAACGGTTCTGAGATCTCTGAGGATGACATTAAACAATTCATTTCTCAACAGGTGGTGTATTACAAGAGAATCCACAAGGTTATTTTCACAGACACTATTCCTAAAGCAGCCTCTGGCAAAATTCTGCGGAAGGATTTAAAAGCAAGGCTGCCATCAGATCTGGACAATTAA 1629 0.5273 MEAPPTEFIFRSRLPDIYIPTHLPLHSYVFENISQVKDRPCLINGDTGEIFTYADVELTARRVAAGLSKIGIRQGDVIMLVLRNCPQFAMAFLGASFAGAAVTTANPLFTPAELAKQATASKSKLIITQAAFVEKIKDFAGTHGVSLMCIDSTFPEKEGILHFSQLTQANEADMPAVKISPDDVVALPYSSGTSGVPKGVMLTHKNLVTFGAQLVDGENPNQYTTSDDLHICVLPLFHIYALNSILLCCIRAGAAILIVSKYDVTTLLRMIETYKVTMASFVPPILLNIVKSEEVDRYDLSSIRMIVTGAAPVSMELQEALRAKLPHAVLGQGYGMTEGGPISISLAFAKEPAEMKPGACGCLIRNAEMKIVDIETGASLPRNKAGEICIRGNQVMKGYLNDPEATKTTIDPEGWLHTGDIGYVDDDGEVFIVDRLKEIIKYKGFQVAPAELEALLVSHPLISDAAVVPMKDEAAGELPVAFVVRSNGSEISEDDIKQFISQQVVYYKRIHKVIFTDTIPKAASGKILRKDLKARLPSDLDN 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5372g00015 542 Pfam AMP-binding enzyme 31 442 IPR000873 -
Pral5372g00015 542 Gene3D - 2 436 IPR042099 -
Pral5372g00015 542 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 7 534 - -
Pral5372g00015 542 Pfam AMP-binding enzyme C-terminal domain 451 526 IPR025110 -
Pral5372g00015 542 SUPERFAMILY Acetyl-CoA synthetase-like 9 537 - -
Pral5372g00015 542 FunFam 4-coumarate--CoA ligase 2 438 539 - -
Pral5372g00015 542 FunFam Long-chain-fatty-acid--CoA ligase FadD 11 437 - -
Pral5372g00015 542 CDD 4CL 19 532 - -
Pral5372g00015 542 Coils Coil 540 542 - -
Pral5372g00015 542 ProSitePatterns Putative AMP-binding domain signature. 187 198 IPR020845 -
Pral5372g00015 542 Gene3D - 437 538 IPR045851 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5372g00015 Pral-Chr5372 120108 127317 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5372g00015 6 504 Monolignol Biosynthesis Gene Families AT1G51680 63.762 0.0 652
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5372g00015 K01904 - gmx:548034 800.045