Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5372g00011 ATGGAAACTCAGCAAGACGATGAAGAATTCATTTTCCGTTCCAAACTGCCCGACATTTACATCCCATCCCACCTACCATTGCACGGTTACTGCTTCCAGAACTTGTCACTATTCAAAGACCGTCCCTGCCTTATCAACGGCAACACCGGCGAGATCTTCACCTACGCAGATGTCGAACTCACCGCCCGGAAAGTCGCCGCCGGTCTCAACAACCTCGGCATCCAACAGGGCCACGTCATCATGCTCCTCCTCCAGAACTGTCCCCAATTCGTCTTCGCCTTCCTCGGCGCCTCCTACCGCGGCGTCACCATCACGACGGCCAACCCATTTTACACCCCGGCCGAGGTCGCCAAGCAAGCCACAGCTTCCCAAGCCAAGCTCATCATAACACAATCATCCTTCGTCGACAAGGTTAAGGATTTAGAGACAAAGAGTGGCATCAAATTGATGAGTATCGACGAGACGACTGATTTTCTCCGCTTCTCGGATTTAACGAACGCCGACGAAGGGGGGCTCCCGCCACTGAATATCTCCGCAGACGACGTCGTTGCGCTGCCTTATTCATCAGGCACCACAGGGCTTCCTAAAGGGGTTATGCTCACCCACAGAAATCTAGTAACAAGCGTGGCTCAACAGGTTGATGGAGAGAACCCTAATCTGTATTTTAAAAGCGACGATGTGATTGTGTGCGTTTTGCCTCTGTTTCACATTTACGGGTTGAACTCTGTGTTGCTGTGTGGGCTTCGAGTCGGTGCTGCGATTTTGATCGTACAGAAGTTTGAGATGGGGACGTTACTGGAGCTGATCCAGAAACACCGAGTGAGCATTGCGCCATTTGTGCCACCCATAGTGTTGGCTCTGGCTAAGAGCCCCGACCTGCATCGATACGACCTGTCGTCTGTCAGGTTGATCTTGTCTGGTGCGGCTCCCCTGGGAAAAGAGCTCGAAGATGCCGTGAGGGAGAAGCTTCCCCAAGCCATACTCGGACAGGGTTATGGAATGACGGAGGCAGGGCCAGTGCTGTCAATGAGCTTAGCGTTTGCGAAAGAGGCGTATGGGGTAAAATCAGGTGCGTGTGGGACCGTCGTAAGAAACGCCGAGATGAAGATCGTCGACCTTAACTCCGGCGCATCCCTTGGCCGCAACCAACCCGGTGAGATTTGCGTCAGAGGACATCAGATCATGAAAGGTTACATAAACGATCCAGAGGCAACGAAGAGAACAATAGACGAAAAGGGATGGCTGCACACAGGTGATATTGGTTACATAGACGATGATGAAGAGCTGTTCATTGTGGATCGCTTAAAGGAACTCATCAAATACAAAGGCTTCCAAGTTGCTCCTGCCGAGCTTGAGGCTCTCCTCATTTCTCATCCTTCCATTTCTGATGCTGCCGTTGTTCCGATGAAAGATGAAGCTGCAGGAGAAGTTCCAGTTGCTTTTGTCGTTACATCAAATGGTTCTAGGGTCTCCGAAGATGAAATCAAGCATTACATCTCCAAACAGGTTGTATTTTACAAGAGAATCAATAGGGTCATCTTCGTAAACTCGATTCCAAAGGCCCCCAGTGGCAAGATATTGCGCAAAGACCTAAGAGCAAGACTCATACCAAGTTAG 1617 0.5059 METQQDDEEFIFRSKLPDIYIPSHLPLHGYCFQNLSLFKDRPCLINGNTGEIFTYADVELTARKVAAGLNNLGIQQGHVIMLLLQNCPQFVFAFLGASYRGVTITTANPFYTPAEVAKQATASQAKLIITQSSFVDKVKDLETKSGIKLMSIDETTDFLRFSDLTNADEGGLPPLNISADDVVALPYSSGTTGLPKGVMLTHRNLVTSVAQQVDGENPNLYFKSDDVIVCVLPLFHIYGLNSVLLCGLRVGAAILIVQKFEMGTLLELIQKHRVSIAPFVPPIVLALAKSPDLHRYDLSSVRLILSGAAPLGKELEDAVREKLPQAILGQGYGMTEAGPVLSMSLAFAKEAYGVKSGACGTVVRNAEMKIVDLNSGASLGRNQPGEICVRGHQIMKGYINDPEATKRTIDEKGWLHTGDIGYIDDDEELFIVDRLKELIKYKGFQVAPAELEALLISHPSISDAAVVPMKDEAAGEVPVAFVVTSNGSRVSEDEIKHYISKQVVFYKRINRVIFVNSIPKAPSGKILRKDLRARLIPS 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5372g00011 538 FunFam Long-chain-fatty-acid--CoA ligase FadD 13 436 - -
Pral5372g00011 538 Pfam AMP-binding enzyme C-terminal domain 450 525 IPR025110 -
Pral5372g00011 538 SUPERFAMILY Acetyl-CoA synthetase-like 12 536 - -
Pral5372g00011 538 ProSitePatterns Putative AMP-binding domain signature. 185 196 IPR020845 -
Pral5372g00011 538 Pfam AMP-binding enzyme 38 441 IPR000873 -
Pral5372g00011 538 CDD 4CL 21 531 - -
Pral5372g00011 538 FunFam 4-coumarate--CoA ligase 2 437 537 - -
Pral5372g00011 538 Gene3D - 2 435 IPR042099 -
Pral5372g00011 538 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 7 533 - -
Pral5372g00011 538 Gene3D - 436 536 IPR045851 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5372g00011 Pral-Chr5372 85569 112459 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5372g00011 2 503 Monolignol Biosynthesis Gene Families AT1G51680 67.710 0.0 706
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5372g00011 K01904 - fve:101313178 859.751