LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral5369g00013	ATGCCGAAGTCCAAACGCAATAAAACAGTCACACTCTCGAAGACTAAGAAAAAGGGGAGGGAGCATAAAGAAGCAATAGTAAATGCCATAAAAGAGGCTGCTGAAAAATACAGCTCAGTGTATGTGTTCTCTTTTGAAAACATGAGAAATAAGAAATTCAAGGAGTTCAGGGAGCAACTGAAATCTAACAGCAGGTTTTTCTTGGGGTCAAACAAAGTCATGCAGGTCGCTTTAGGTCATTCTGCTGCTGATGAGATTAGACCTGGTCTTCACAAGGTTTCTAAGCTTCTGCGAGGAGATGCTGGAATGTGTTTTACAAATTTGCCAAAAGAAGAAGTTGAAAGGTTATTTAACGAGTTTGAGGAGTATGACTTTGCGAGAACAGGAAGCACTGCGACTGAGAAGGTGGAACTCAAAGAAGGTCCTTTGGAGCAGTTCACCCATGAGATGGAGCCATTTCTACGGAAGCAAGGCATGCCTGTCCGGTTAAATAAAGGAGTGGTGGAACTTGTCTCAGATTTTGTTGTCTGTGAGGAGGGGAAGCCATTGTCACCTGAGGCATCTCGCATACTGCGTTTACTGGGAATACAGATGGCTACATTTAAACTCCATCTGATATGCAGATGTAGTCCTGACGATTTTGAGCTGTACATACAAGGACCAGATGATTCAGACGTGGAAACGAATTAG	690	0.4304	MPKSKRNKTVTLSKTKKKGREHKEAIVNAIKEAAEKYSSVYVFSFENMRNKKFKEFREQLKSNSRFFLGSNKVMQVALGHSAADEIRPGLHKVSKLLRGDAGMCFTNLPKEEVERLFNEFEEYDFARTGSTATEKVELKEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPEASRILRLLGIQMATFKLHLICRCSPDDFELYIQGPDDSDVETN	229

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral5369g00013	229	PANTHER	MRNA TURNOVER PROTEIN 4 MRTO4	1	220	-	-
	Pral5369g00013	229	Pfam	Insertion domain in 60S ribosomal protein L10P	126	196	IPR040637	-
	Pral5369g00013	229	Gene3D	-	30	209	IPR043141	-
	Pral5369g00013	229	FunFam	Ribosome assembly factor mrt4	125	198	-	-
	Pral5369g00013	229	Pfam	Ribosomal protein L10	19	120	IPR001790	-
	Pral5369g00013	229	SUPERFAMILY	Ribosomal protein L10-like	20	144	IPR043141	-
	Pral5369g00013	229	Gene3D	-	125	198	IPR043164	-
	Pral5369g00013	229	CDD	Ribosomal_P0_like	21	184	IPR033867	GO:0000027
	Pral5369g00013	229	FunFam	Ribosome assembly factor mrt4	29	129	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral5369g00013	Pral-Chr5369	74580	77848	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral5369g00013	35	217	Cytoplasmic Ribosomal Protein Gene Family	AT3G11250	20.856	3.41e-10	57.0

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral5369g00013	K14815		-	gmx:100305462	398.667

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