Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5367g00011 ATGGGAAGGCCACCTTGCTGTGATAAATCCAATGTGAAAAGGGGCCTTTGGACTCCCGAGGAGGATGCTAAGCTACTCGCTTATGTCTCCAATCAAGGCACTGGCAATTGGACTCTGGTTCCTAAGAAAGCTGGGTTAAACAGATGCGGTAAGAGCTGTAGGCTTAGATGGACTAACTATCTAAGACCTGATCTCAAGCATCATAGCTTCACACCCCAAGAGGAAGAGCTTATTATTAACCTTCATCAAGCTATAGGAAGCAGGTGGTCTTTGATTGCGAGGAGACTCCCTGGGAGAACAGACAATGATGTGAAGAACCACTGGAACACAAAGCTGAGGAAGAAGCTTATGAAGATGGGAATTGACCCAGTGACCCATAAGCCTGTGTCTCAAGTCCTTTCAGATTTGGGAACTATTAGTTGCCTCTCAACTATAACAACCGAAACACAAGCTCCGAACAACAACTTAATGGTCTCTAATCATCAACTAGATCAAGAGGTGCAGTCACAATTCATAAACCCAGAGAATAATGTCCAGTCACATCATAATGAAGCTCCCCCTTCATGTCCATCACCCTCCTCATCTTCTTCATCTAATATCACACAACTAAGCTCACCTCCTCAGGTTATTACAACTGCTGCTGCTGCTGTTCCTCCTCCTCCTCCTCCTCCTTGTTCATCGTTTGATTGGAGCGAGTTTCTTCTGAGTGACCCGCTCATGTGCACCGAGTTTCAACAGCAGAACCAGTACGACGTGCATGGGATTTTGTCGTCGTTGAGTCCCTCAGTTATGATGCAGAATCAAACTCAAGTTTCGAATAATATCGCAAGCGATGAGGATTCAGGAATCTTGGCTTATGAGGAAAGCATGGAGCGCCAAGTTTGTGATACGCAATATTGTGAAGGAACTTCATCTTCTTCGGGGGACGACTCATTCGTGGATGCTATTTTGAACAGGGATAGTGAGATTAGGGCAGCATTTCCTCTACTCCTAGACGGATCCACTGATTACTAG 1014 0.4546 MGRPPCCDKSNVKRGLWTPEEDAKLLAYVSNQGTGNWTLVPKKAGLNRCGKSCRLRWTNYLRPDLKHHSFTPQEEELIINLHQAIGSRWSLIARRLPGRTDNDVKNHWNTKLRKKLMKMGIDPVTHKPVSQVLSDLGTISCLSTITTETQAPNNNLMVSNHQLDQEVQSQFINPENNVQSHHNEAPPSCPSPSSSSSSNITQLSSPPQVITTAAAAVPPPPPPPCSSFDWSEFLLSDPLMCTEFQQQNQYDVHGILSSLSPSVMMQNQTQVSNNIASDEDSGILAYEESMERQVCDTQYCEGTSSSSGDDSFVDAILNRDSEIRAAFPLLLDGSTDY 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5367g00011 337 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pral5367g00011 337 CDD SANT 69 112 IPR001005 -
Pral5367g00011 337 FunFam Transcription factor RAX3 7 67 - -
Pral5367g00011 337 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pral5367g00011 337 CDD SANT 17 61 IPR001005 -
Pral5367g00011 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Pral5367g00011 337 FunFam transcription factor MYB80 69 129 - -
Pral5367g00011 337 Gene3D - 7 67 - -
Pral5367g00011 337 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pral5367g00011 337 SMART sant 13 63 IPR001005 -
Pral5367g00011 337 SMART sant 66 114 IPR001005 -
Pral5367g00011 337 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pral5367g00011 337 Pfam Myb-like DNA-binding domain 69 110 IPR001005 -
Pral5367g00011 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Pral5367g00011 337 Gene3D - 68 131 - -
Pral5367g00011 337 MobiDBLite consensus disorder prediction 177 207 - -
Pral5367g00011 337 PANTHER F14D16.11-RELATED 1 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5367g00011 Pral-Chr5367 51587 53010 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5367g00011 1 332 MYB Transcription Factor Family AT3G28470 47.093 9.84e-90 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral5367g00011 Myb_DNA-binding 8.3e-16 CL0123