Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5365g00004 ATGAGGAGAACAAATGACTCCAATGGTCAATCCCGTGACCATGGAGGAGGCGGAGATGGCGGTGGTAGTATAAGAGGAGAAGGAGGAGCTTCTTTGCGGAATTTGACTATGACCCACGCCTTATCCTATTTAGCGGTAATGAAACAAATCTTTCAGAACCAAACAGAAAAATATTATATGTTCCAGGCGATCTTGATAGATTTCAAGGCTCACAGGATTGACACTGCTAGTTTTAGAGAAAGGGTGAAGGAACTAATCAAAGGGCATAGCGTTTTGATTTCTGGATTCAATGCCTTCATGCCCAAAGGCTATGAGATAACGCCTGATGAGGATGGAGCTCCTCCAAAGAAAGTGGTTGACTTTTATGAAGCTCGGGATTTTATACGCAAGATGAGGGAACGATTTCAAAATGATGATCATGGATACCAATCATTCAAGGACATTATGAATATGTTCCGCTCAGGGAGGAAAGATGTAACTGAGGTCTACGCGGAGGTTTCTTCCCTTCTTGACAACCATCCTGACTTACTTGAGGAGTTCACCAGATTTGTGCCAAATTATTTTACACCACCTTCTATACAGCGTGCAGCATATGGTCAAAATTTAGTTCAGTGTTTTAACGAGCAGAATTCTGCCACAGCCATTAAGCAGCAATTGCAACTGGACAAGCAACCTCATCAACGAGATAAACTTATTTCTTCTCATGATCACAATCTCAGCATTCATTCATCTAAGCTGAATGATGGCAAAGTAATGAGTAAAGAGCACAAGAAGCAGGTTGAGCAAAGCGGGGATAGGAAAATTAATGACCGGAATGATAGAGAACCTGATCTTTCTAACAAAAGGGGCATGTATGACCAAGCATTTGGTTTCTGTGAGAAAGTTAAGGAGAGGTTGGGCAGCTCAGATGACCACCAGGCGTTCTTGAAGTGCCTTCATATGTTCAGCAGTGGAATACTAAATAGGCATGATTTAAATGATTTGGTAGTCACTTCACTTGGAAAGTATCCTGATCTTATGGATGAATTCGATGACGTCGTGGACCAATGTGAAAATATTGATGGGTTCCTTGCCAATGCCATAAGTAAAAAATCATCTGGTAGTGATGGTCAATTATTCAGATCATCGAAGTTGGAAGATAAAGATAGAGACCAGAAGCGTGAGGTGCATATGCCTAAAGAGAGGGAAGAAAACCATGAGAAATACATGGGGATGTCAATTCATGAACTTGACCCCAGCGATTGTGAACATTGTAATCCCAGCTACCGGCATCTTCCTAGAGATCATCCAATTCCTATTCCTAGTCGGAGATCCAAGCTTGATGCTGAAGTATTGAATGATCACTGGCTATCTGTAACTTCAGGAAGTGAGGATTACTCTTTCAAACATATGCTTAGGAATCAGTATGAAAGAAGCTTGTTCAAATGTGAAGATGACCAATTTGAGCTGGACTTGTTAATAGAGCGTGTGAGGTCAACTGCTAAACGTACAGAGGAGTTATATAATAGCATTATTGGAAACAAAATTAATATTGAGGGTCCAATCCATATTGAAGAATACTTTAGTGTTTTACATTTAAAATGCATTGAGCGTCTGTATGGTGACTATGGTCTTGAAGCTATGGAGGCATTACGTAAGAATCCTATTGTTGCTTTGCCTGTGATGTTGAGTCGACTAAAGCAGAAACGAAAGGAGTGGAAGAAGTGTCGTTCAGAATTCAACAAGGTCTGGGCTGAAATTTATGCTGAAAACTACTACAAATCACTTGACCATCGTAGCTTCTATTTCAAGCAACAAGACTCGAAGAAGCTGAACCCAAAAGCTTTGGTGGCTGAGATCAAAGAAATCAAAGAGAAGCAGCAGAAACAGGAGTGGCCTCAGGTCACTGCCGCTGATAAACTATCTCCCATTCCGCATATACAATTTGAATTTTCAGATGTTGGGATTCATGAAGACCTATATAAACTCGTTTGCTATGCATGTAAAGTGATCATTGCTAATAAAGGGTTGTTAAATAAAATGTTGAGAGTCTGGACTACCTTCTTGGAGCCGATGCTTGGTGTTCCTTCTCGGTCTGATAGGCAACCGAAATCCGATAAAACTAATGGTAGAGAGACTGAAGCAAAGAAATTTTGCCAGATTTGCTTTGAGTGTGGTGATAAAGAAGCTGGATCTGGTGACGGTCGCCCTTGTAAAGATAATGCTCTGATGGAGAGAGGGCCAAAAAATGTAGATGGTAATGCTAAAGCCTTTGACTTTAGTAAACAATTCGCCCATGATGCACAAAACGATCATGACTCTGTAGCCAAGTCTCAAATTGGTGATTTATCTGTGGTGGAGAATTGTGACGGGGCAACCCCAGATCTTTTGGCCAATGGAGTTCCTATTCAAAGCAATGACTTTGCTGGGCACTGCCAAACTGGAAAGGAAGAGACTGAACTATCTTCCTCGCTAAATGGTGATTCTGAAGAGGATAACTGTGTTGGCAATGGAGATGGGAACGTGCAGGTAACGCCCAGCTTAGAACGCAATGCAAGAAGAAAATATCGATCAAGAAATGGGGAGGAAGAATGCCCTCTGGAGGTTGGGATTCATAACGATGCAGATGTCGAGGACAAGGACATTGAAAATGCTTCTGAAGGTGGTGAAGATGTCTCAGGTGGGGAGTTTGCTGATCACCAGTGCCCTCAGGAAGAGCATGAGGGGCAGGGAGATATGGAACACGATGATATTGATGATAAAGCTGAAGTTGAGAGAATGTGTAACGCACAATCTGATTCAGATGGCTCATTGATAGACAGGTCCTTTTTGTCTGCGAAAACTCTTACAAAGTATGTGTCGCCAGTTTTAGTAGAAGAAAGAAGAGAATCCAGGGTTATCTATGGAAATGATGATTTCTATGTGCTTTTCAGGCTTCACCATATTTTGTATGAAAGGATCTTATCAGCAAAAACAAATTCAATGAATGATGAAATGAAGCGTAGAATTGCAAAGGATGCTAATTCTCCAGATCCATATTCAAGATTTATGGATGCACTTTACAATTTACTTGATGGATCTGTTGACCATGCAAAGTTTGAAGATGAATGCCAAGAAATTATTGGAAACCAGTCATACATGTTATTCACATTGGACAAGTTGATCCATAAGTTGGTTAAACAGCTTCAAGTGGTTGCAAATGTTGAAATAAATAATATACTTCTTCAATTGTTAGAGTACCAAAATTCTCAGAAACCCGAGAGGCAAACTCATTCAGCGTATCTTGCGAATGCACGGGTGATCCTCCCGGAGGAGAATATATATCGCCTGGAATGTTCATCGGGCCCCTCCAAACTGTTCATCTGGCTAATGGACAGCACCAATGAAATGCCAACAGGGTTTACCCTTGATCCAAATTTTGCTGATTATCGTTACAACGATTTTCTATCAGTCTTTCCCGTCAAAGAGGAACCCCATGGTTTTGTGCTACGAAGGAACATGCGCAAACATGGTGCTTCAGACGAGTTTCCAGATATGGAGGGTGTTATAATGATCAACAATTTGGAGCATGTTATAGCTTGCAACTCAATCAAGCATAGACTACCACTCCAGGAGAAGTTTGACCATAACACCCCCCAAACGACGGAGGAGGTCTATGCCTGA 3642 0.4135 MRRTNDSNGQSRDHGGGGDGGGSIRGEGGASLRNLTMTHALSYLAVMKQIFQNQTEKYYMFQAILIDFKAHRIDTASFRERVKELIKGHSVLISGFNAFMPKGYEITPDEDGAPPKKVVDFYEARDFIRKMRERFQNDDHGYQSFKDIMNMFRSGRKDVTEVYAEVSSLLDNHPDLLEEFTRFVPNYFTPPSIQRAAYGQNLVQCFNEQNSATAIKQQLQLDKQPHQRDKLISSHDHNLSIHSSKLNDGKVMSKEHKKQVEQSGDRKINDRNDREPDLSNKRGMYDQAFGFCEKVKERLGSSDDHQAFLKCLHMFSSGILNRHDLNDLVVTSLGKYPDLMDEFDDVVDQCENIDGFLANAISKKSSGSDGQLFRSSKLEDKDRDQKREVHMPKEREENHEKYMGMSIHELDPSDCEHCNPSYRHLPRDHPIPIPSRRSKLDAEVLNDHWLSVTSGSEDYSFKHMLRNQYERSLFKCEDDQFELDLLIERVRSTAKRTEELYNSIIGNKINIEGPIHIEEYFSVLHLKCIERLYGDYGLEAMEALRKNPIVALPVMLSRLKQKRKEWKKCRSEFNKVWAEIYAENYYKSLDHRSFYFKQQDSKKLNPKALVAEIKEIKEKQQKQEWPQVTAADKLSPIPHIQFEFSDVGIHEDLYKLVCYACKVIIANKGLLNKMLRVWTTFLEPMLGVPSRSDRQPKSDKTNGRETEAKKFCQICFECGDKEAGSGDGRPCKDNALMERGPKNVDGNAKAFDFSKQFAHDAQNDHDSVAKSQIGDLSVVENCDGATPDLLANGVPIQSNDFAGHCQTGKEETELSSSLNGDSEEDNCVGNGDGNVQVTPSLERNARRKYRSRNGEEECPLEVGIHNDADVEDKDIENASEGGEDVSGGEFADHQCPQEEHEGQGDMEHDDIDDKAEVERMCNAQSDSDGSLIDRSFLSAKTLTKYVSPVLVEERRESRVIYGNDDFYVLFRLHHILYERILSAKTNSMNDEMKRRIAKDANSPDPYSRFMDALYNLLDGSVDHAKFEDECQEIIGNQSYMLFTLDKLIHKLVKQLQVVANVEINNILLQLLEYQNSQKPERQTHSAYLANARVILPEENIYRLECSSGPSKLFIWLMDSTNEMPTGFTLDPNFADYRYNDFLSVFPVKEEPHGFVLRRNMRKHGASDEFPDMEGVIMINNLEHVIACNSIKHRLPLQEKFDHNTPQTTEEVYA 1213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5365g00004 1213 Pfam C-terminal domain of Sin3a protein 961 1191 IPR031693 -
Pral5365g00004 1213 MobiDBLite consensus disorder prediction 364 393 - -
Pral5365g00004 1213 MobiDBLite consensus disorder prediction 1 27 - -
Pral5365g00004 1213 Gene3D Paired amphipathic helix 39 101 IPR036600 GO:0006355
Pral5365g00004 1213 ProSiteProfiles PAH domain profile. 117 187 IPR003822 GO:0006355
Pral5365g00004 1213 ProSiteProfiles PAH domain profile. 33 103 IPR003822 GO:0006355
Pral5365g00004 1213 SUPERFAMILY PAH2 domain 115 185 IPR036600 GO:0006355
Pral5365g00004 1213 Gene3D Paired amphipathic helix 116 187 IPR036600 GO:0006355
Pral5365g00004 1213 MobiDBLite consensus disorder prediction 248 281 - -
Pral5365g00004 1213 MobiDBLite consensus disorder prediction 878 908 - -
Pral5365g00004 1213 PANTHER SIN3B-RELATED 35 1087 IPR039774 GO:0003714
Pral5365g00004 1213 MobiDBLite consensus disorder prediction 807 838 - -
Pral5365g00004 1213 Pfam Sin3 family co-repressor 417 504 IPR013194 -
Pral5365g00004 1213 SUPERFAMILY PAH2 domain 285 349 IPR036600 GO:0006355
Pral5365g00004 1213 SMART hdac_interact2seq4b 414 514 IPR013194 -
Pral5365g00004 1213 SUPERFAMILY PAH2 domain 34 102 IPR036600 GO:0006355
Pral5365g00004 1213 FunFam Paired amphipathic helix protein SIN3 279 352 - -
Pral5365g00004 1213 Gene3D Paired amphipathic helix 280 352 IPR036600 GO:0006355
Pral5365g00004 1213 FunFam Paired amphipathic helix SIN3-like protein 116 187 - -
Pral5365g00004 1213 MobiDBLite consensus disorder prediction 374 393 - -
Pral5365g00004 1213 ProSiteProfiles PAH domain profile. 281 350 IPR003822 GO:0006355
Pral5365g00004 1213 MobiDBLite consensus disorder prediction 893 908 - -
Pral5365g00004 1213 Pfam Paired amphipathic helix repeat 142 184 IPR003822 GO:0006355
Pral5365g00004 1213 Pfam Paired amphipathic helix repeat 56 99 IPR003822 GO:0006355
Pral5365g00004 1213 FunFam Paired amphipathic helix protein Sin3 39 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5365g00004 Pral-Chr5365 17292 27368 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5365g00004 27 111 WRKY Transcription Factor Family AT4G12020 39.080 3.58e-10 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pral5365g00004 Sin3a_C 1.2e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5365g00004 K11644 - gmx:100812405 1269.99