Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5365g00002 ATGTCTTCGCCTGTTCCTCAAGAATTTGATTCCACCCCGCAGATCTACTCTCGGAAAGACAAGTCACTTGGATTACTCAGCTCTAACTTCCTCAAGTTATATAATCGGGAAGGTATTGGGACGATTGGACTTGACGATGCTGCTTCCCAACTAGGAGTTCAGCGTCGCCGCATGTATGATGTAGTGAACATATTGGAGAGCGTTGGAATTGTCGCAAGAAAAGGGAAAAATCTGTACCTATGGAAAGGTTTCAGAGAAATTCCTCGAGCTTTGAACGAGCTTAAGGAGGAAGGTATGAGAGAAAAATTTGATGCATCCTACTGCAGGTCAGCTGAAACATCAAAGAACAAAGAAAGCGGTGGCTCTGAAACTAAAACTGGTCCTTTGGCAGCGGCATTGCGCAAAACTGACGGCTGCAGAAGAGACAAATCTATGGCACTTTTGACCGAGAATTTCATAAAGCTCTTCCTCTGTTCAGATGTTGAAATTATCTTGCTTGAAGATGCTGCAAAGGTAATGCCGGGTGATGCCCAGAATTCAACTGCCTTGAGAACAAAAGTCAGGCGTTTATATGACATAGCGAATGTCCTCTCATCAATCAATCTGATCGAGAAGACGAATCATCCTGAGTATAGGAAAACAGCATATAGGTGGTTGGGAGGGAAAGCCAGTAGAGAATCTGATGGCATGTTGGATCAAAGTGCATCCAGGAAGAGAGTGTTTGGTGCGGAAATTACAAATTACAGTCTGAAGAGAAATAAAACAGACTCTTCAATGGATTCGCAGTCCCATGGAAAGGTTGTGCCAGTGCATAAAAAACAAGATGATTTGGAAAATGAATACAGATGTAAAACTCTGGAGCAGCCCCCTAAATGCAGTTCGAAGGCCATAGACTTTGGCCCTTTTGCTCCTGTCAAGTTTAGAAGAGAAGATCCAGAGCACAGACGCATGGGACAGGTTCATGACATGGAGACAATGAGTTCTAAATATCGCCGAGAGTATCACAACTAA 1011 0.4352 MSSPVPQEFDSTPQIYSRKDKSLGLLSSNFLKLYNREGIGTIGLDDAASQLGVQRRRMYDVVNILESVGIVARKGKNLYLWKGFREIPRALNELKEEGMREKFDASYCRSAETSKNKESGGSETKTGPLAAALRKTDGCRRDKSMALLTENFIKLFLCSDVEIILLEDAAKVMPGDAQNSTALRTKVRRLYDIANVLSSINLIEKTNHPEYRKTAYRWLGGKASRESDGMLDQSASRKRVFGAEITNYSLKRNKTDSSMDSQSHGKVVPVHKKQDDLENEYRCKTLEQPPKCSSKAIDFGPFAPVKFRREDPEHRRMGQVHDMETMSSKYRREYHN 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5365g00002 336 Gene3D - 135 222 IPR036388 -
Pral5365g00002 336 Gene3D - 12 85 IPR036388 -
Pral5365g00002 336 Pfam E2F/DP family winged-helix DNA-binding domain 19 83 IPR003316 GO:0005667|GO:0006355
Pral5365g00002 336 Pfam E2F/DP family winged-helix DNA-binding domain 142 220 IPR003316 GO:0005667|GO:0006355
Pral5365g00002 336 SUPERFAMILY "Winged helix" DNA-binding domain 17 81 IPR036390 -
Pral5365g00002 336 SMART E2F_TDP_2 140 220 IPR003316 GO:0005667|GO:0006355
Pral5365g00002 336 SMART E2F_TDP_2 18 83 IPR003316 GO:0005667|GO:0006355
Pral5365g00002 336 PANTHER TRANSCRIPTION FACTOR E2F 11 288 IPR015633 GO:0000978|GO:0006357
Pral5365g00002 336 FunFam E2F transcription factor 8 13 85 - -
Pral5365g00002 336 SUPERFAMILY "Winged helix" DNA-binding domain 142 220 IPR036390 -
Pral5365g00002 336 FunFam E2F transcription factor-like E2FE 135 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5365g00002 Pral-Chr5365 9050 12391 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5365g00002 14 336 E2F-DP Transcription Factor Family AT3G01330 49.245 3.91e-96 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Pral5365g00002 E2F_TDP 1.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5365g00002 - K09391 lang:109346387 386.726