Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5364g00001 ATGATACCAACTTATCCTTATTCTCTTTCTTCTTCTTCTAATTCTCCTCCTACTTCTACTATGCCTATTATAGATCTTAATATTGCTGAAGATCAAAGCCATGAGCTAATTTTTAGCCCAACCCACCAACCTTCTTCTTCTTCCTCTTCTCTATCATGCCCTATTCCCTTTAACCCCCCTCAGCAGGATCACGCTGGATCTTCCTACTGGGAGTCCAACAACCTACACAATGATCATGTCGATGCTGGGAAGAATATTATTGCTTCAAGTGGGTCATGGAATGATCAAGAAGAAAAGGGCGGTGTTGAGATCAGAAAGAGGGGACTTAAACTGAAAGTTTGGAAGAGATCAGCATCAGGATCGAGAAAGAGGGAGGATGATGAAAATCATCAAATAACGGAGGACAATGATCCAGTGAAGTGGATGCCTTCAAAGATGAGAATGATGAGGAAGATGATGGCTTCAGATCATAAGGCTTCTTCTTCTTCTTCTTCTGATATCAGTATTATGGGCACCTCTCGGAAGATTATTAACTCTGAAGATCAGAACCAGAACCAGAACCAGAATCAGAATCAACAAAGACCATTGTTATTGTCTCCTCGAGGAGGAACTGATAATAGCAGCAGCAGCATCAATTCTTCAACCCACAGTAACAGTAACAATAATAATAATACTATCACTGTTAGGGTTTGTGCTGATTGCCACACCACCAAGACCCCTCTTTGGAGAAGTGGACCAAGAGGTCCAAAGTCACTATGCAACGCTTGTGGGATTCGACAAAGGAAAGCGAGGCGAGCCATGGCGGCGGCGGCGGCTGCTGCAAACGAGTCGCCGGATCTGCATGTGGCTGAGAAATCTGCAGCAGTGAAAGGTACTTACAGGGTTCACAGCAAAGAGAAGAAGTTGAAATTGGAGTGTGAGACTCATCAGATGAAGAAGAAGAAGCACAAGCTTGATGAAGATCATCATCAGGACATGGAAGCTAACAATAATAATAATTCAAGAGGGAGATCATCGTCGTCATCACCAACAATAATAAACAAGTTTAGTTTTGAGGATTTCACAGTAAGCTTGATGAGTAAGAACTTGGCAGCTGCATCACAAGTTTTCCCTCAGGATGAGAAGGAGGCTGCAATTCTTCTTATGGCTTTATCTTGCAATGGCCTAGTTCATGGATAG 1179 0.4283 MIPTYPYSLSSSSNSPPTSTMPIIDLNIAEDQSHELIFSPTHQPSSSSSSLSCPIPFNPPQQDHAGSSYWESNNLHNDHVDAGKNIIASSGSWNDQEEKGGVEIRKRGLKLKVWKRSASGSRKREDDENHQITEDNDPVKWMPSKMRMMRKMMASDHKASSSSSSDISIMGTSRKIINSEDQNQNQNQNQNQQRPLLLSPRGGTDNSSSSINSSTHSNSNNNNNTITVRVCADCHTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMAAAAAAANESPDLHVAEKSAAVKGTYRVHSKEKKLKLECETHQMKKKKHKLDEDHHQDMEANNNNNSRGRSSSSSPTIINKFSFEDFTVSLMSKNLAAASQVFPQDEKEAAILLMALSCNGLVHG 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5364g00001 392 CDD ZnF_GATA 230 262 IPR000679 GO:0006355|GO:0043565
Pral5364g00001 392 Gene3D - 223 281 IPR013088 GO:0006355|GO:0008270
Pral5364g00001 392 MobiDBLite consensus disorder prediction 1 22 - -
Pral5364g00001 392 ProSitePatterns GATA-type zinc finger domain. 231 256 IPR000679 GO:0006355|GO:0043565
Pral5364g00001 392 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 1 391 - -
Pral5364g00001 392 MobiDBLite consensus disorder prediction 118 135 - -
Pral5364g00001 392 MobiDBLite consensus disorder prediction 309 343 - -
Pral5364g00001 392 MobiDBLite consensus disorder prediction 114 143 - -
Pral5364g00001 392 Pfam GATA zinc finger 231 264 IPR000679 GO:0006355|GO:0043565
Pral5364g00001 392 ProSiteProfiles GATA-type zinc finger domain profile. 229 261 IPR000679 GO:0006355|GO:0043565
Pral5364g00001 392 SMART GATA_3 225 277 IPR000679 GO:0006355|GO:0043565
Pral5364g00001 392 MobiDBLite consensus disorder prediction 309 328 - -
Pral5364g00001 392 MobiDBLite consensus disorder prediction 329 343 - -
Pral5364g00001 392 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 228 265 - -
Pral5364g00001 392 MobiDBLite consensus disorder prediction 182 224 - -
Pral5364g00001 392 FunFam GATA transcription factor 21 225 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5364g00001 Pral-Chr5364 15208 17428 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5364g00001 139 392 C2C2-Gata Transcription Factor Family AT4G26150 39.080 1.97e-30 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pral5364g00001 GATA 5.4e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5364g00001 - - pcin:129320693 400.979