Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5363g00001 ATGTCACTGCGCGCTTTCAAGGAGACTCTCAAGCCGTGCACAAGCCAACCGTCTTCTCCATCGGTTAGCCAAGCGCAATCTTCGATTTTCCGAGATTCCGACTTCCCAATCCCGAGGAAACCCCCAAAGTCCTCTCTCACCCAGCAGCTTCGTCGCCTGCAAGACCCACTTGCTCCTCCCCTAATTCAGCCTCACAATTCCCTAAGCGAGAAAGGAACAGAAAGTAGTGACGTCGTGGATGATGATGATGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGCCAGAATTGAAGAGGGAAAAATTCGGTAGAGCTAAATTGTGTCAGTTTCAGTTCGATCATACTGGACCCTTTGAGCCTCTGGTATTGTCTTCGGATGGAGAAGTTCCAGTGGTACAGGTTCCTGCATCTATCAACTGCAGACTGCTTGAACATCAAAGAGCGGGAGTGAAGTTTCTGTATAGTTTGTATAAAAACAATCATGGAGGCATTCTTGGCGATGACATGGGTCTTGGAAAGACCATTCAAACAATAGCATTTCTTGCTGCTGTGTTTGGTAAAGATGGAGAATATATGCCAAAGGAAAATCAAGCAATGAAAAGAGACCCTGTATTAATAATTTGCCCAACTTCTGTTATCCATAACTGGGAGAGTGAGTTCTCTAAATGGGCAAACTTTAGTGTTTCCATTTATCATGGTTCAAACCGAGATCTAATATATGATAAATTGGAAGCACATGGAGTGGAGATACTTATTACCAGTTTTGACACATACAGAATTCATGGTAGCATCTTGTCAGAAATCAAATGGGACATTGTGGTCATTGATGAGGCTCATCGGCTCAAGAATGAGAAATCAAAGCTCTACAGAGCATGTTTAGAAATAAAAACCCAAAGACGTTTTGGTCTTACTGGCACGATCATGCAAAATAAGATCATGGAACTGTTTAATCTCTTTGACTGGGTTGTTCCAGGATCCCTGGGAACACGGGAACATTTTCGAGATTTCTATGATGAACCCCTCAAGCACGGTCAGAGGTCAACTGCTCCGAAGAGGTTTGTTGATATTGCCAACAAGCGAAAACTGCACCTTGTTACAGTTCTTCAGAAATATATGCTAAGAAGGACGAAGGAAGAGACCATTGGGCATCTTATGATGGGAAAGGAAGATAATGTTGTGTTCTGTGCCATGAGTGAATTACAGAAACGGGCATATCGGAGAATGTTACAACTTCCTGACATCCAATGCCTTATTAATAAGGATTTGCCTTGTAGCTGTGGAAGCCCACTCACACAAGTTGAATGTTGCAAGAGGATTGTATCAAATGGAATCATTTGGCCTTACCTCCACAGAGATAACCCTGATGGTTGTGATTCATGTCCCTTTTGCCTTGTCCTTCCTTGCCTTGTCAAGCTCCAACAGATAAGCAATCACCTTGAGCTGATCAAGCCAAACCCCAAAGATGACCCAGAGAAACAAAGAAAAGACGCAGAGTTTGCTGCTGCTGTCTTTGGCCATGATATAGATTTGGTGGGTGGGAACACGCAGAATGAGAATTTTATGGGTCTAAGTGATGTCAAACATTGTGGAAAAATGAGAGCACTTGAAAAACTTTTGTTTTCATGGATCTCTCAGGGTGACAAAATACTTGTGTTTAGCTATTCTGTAAGAATGCTTGACATACTGGAGAAATTTCTTATAAGAAAAGGCTACTGCTTCTCAAGGCTTGATGGATCTACTCCAACTAATTTACGTCAGTCTCTGGTTGATGACTTCAACTCAAGTCCAAGCAAACAAGTATTCTTGATATCAACTCGAGCTGGCGGGCTTGGATTGAACCTTGTCAGTGCAAATCGTGTGGTGGTATTTGATCCCAACTGGAATCCCGCTCAAGACTTACAGGCACAGGACAGGTCGTTCCGATTTGGGCAGAAGCGACATGTTGTGGTATTCCGGCTTCTTGCAGCTGGCTCACTTGAAGAGCTTGTTTATTCTCGTCAGATCTACAAGCAGCAACTGTCAAATATTGCTGTCTCTGGAAAAATGGAAAAGCGTTATTTTGAAGGGGTCCAGGACTGCAAGGAATTTCAGGGGGAACTTTTTGGAATTTGCAATTTATTTCGAGATTTATCTGACAAGCTTTTTACAAGCGAAATAGTTCATGTGCATGATAAGGAAGGAAAAGAGCACAAGCGTAGAATAGAGCGAGGAGAAAAACTTGTTCCTTCAGAAGAAGCTGATATATTAGTATCAGGTTCTGGGAGCAGGTTATCAACCAATTATAAGGGGACTTCAACTAGTGAAGCAGATCTGGAAGATCTTGGCATTGTCTATGCTCATCGGAATGAAGACATAGTCAACTTCGGTTCCGCCATTCAAGGGAAGACAAAGACCACCATCCATCACAGTGAAAGCCAAAGCATGCCTCTTGTCCAGGGAGAAGAACCAGAGTTTGCAGTTAAAAAACAGAAAGTTCCCATCATCAATGAGAGGAAGAGAGCCCAATTTAGGCTGCTCGCTCGGTCTAGAGGCATGGGAGAGCTTGAATTTAGCATGTGGTTATTATCAGCGACTCCAAGAGAAAGAGAGGAAGTGCTTCAAGAATACAGGACTACAGGAGGAAGGAGATACCTTGAAGCCGAAAGGTACAGTCTTCCTCTTGCCAGTGAAGGCTGA 2676 0.4346 MSLRAFKETLKPCTSQPSSPSVSQAQSSIFRDSDFPIPRKPPKSSLTQQLRRLQDPLAPPLIQPHNSXLSEKGTESSDVVDDDDEEEEEEEEEEEPELKREKFGRAKLCQFQFDHTGPFEPLVLSSDGEVPVVQVPASINCRLLEHQRAGVKFLYSLYKNNHGGILGDDMGLGKTIQTIAFLAAVFGKDGEYMPKENQAMKRDPVLIICPTSVIHNWESEFSKWANFSVSIYHGSNRDLIYDKLEAHGVEILITSFDTYRIHGSILSEIKWDIVVIDEAHRLKNEKSKLYRACLEIKTQRRFGLTGTIMQNKIMELFNLFDWVVPGSLGTREHFRDFYDEPLKHGQRSTAPKRFVDIANKRKLHLVTVLQKYMLRRTKEETIGHLMMGKEDNVVFCAMSELQKRAYRRMLQLPDIQCLINKDLPCSCGSPLTQVECCKRIVSNGIIWPYLHRDNPDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPKDDPEKQRKDAEFAAAVFGHDIDLVGGNTQNENFMGLSDVKHCGKMRALEKLLFSWISQGDKILVFSYSVRMLDILEKFLIRKGYCFSRLDGSTPTNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVVFDPNWNPAQDLQAQDRSFRFGQKRHVVVFRLLAAGSLEELVYSRQIYKQQLSNIAVSGKMEKRYFEGVQDCKEFQGELFGICNLFRDLSDKLFTSEIVHVHDKEGKEHKRRIERGEKLVPSEEADILVSGSGSRLSTNYKGTSTSEADLEDLGIVYAHRNEDIVNFGSAIQGKTKTTIHHSESQSMPLVQGEEPEFAVKKQKVPIINERKRAQFRLLARSRGMGELEFSMWLLSATPREREEVLQEYRTTGGRRYLEAERYSLPLASEG 892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5363g00001 892 MobiDBLite consensus disorder prediction 1 101 - -
Pral5363g00001 892 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 133 376 IPR027417 -
Pral5363g00001 892 FunFam Switch 2 125 375 - -
Pral5363g00001 892 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 535 688 IPR001650 -
Pral5363g00001 892 PANTHER SNF2/RAD54 FAMILY MEMBER 16 807 - -
Pral5363g00001 892 SMART helicmild6 561 644 IPR001650 -
Pral5363g00001 892 MobiDBLite consensus disorder prediction 77 96 - -
Pral5363g00001 892 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 270 697 IPR027417 -
Pral5363g00001 892 Pfam SNF2-related domain 158 416 IPR000330 GO:0005524|GO:0140658
Pral5363g00001 892 Gene3D - 388 701 IPR027417 -
Pral5363g00001 892 SMART ultradead3 139 334 IPR014001 -
Pral5363g00001 892 Pfam Helicase conserved C-terminal domain 532 644 IPR001650 -
Pral5363g00001 892 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 155 326 IPR014001 -
Pral5363g00001 892 CDD SF2_C_SNF 526 655 - -
Pral5363g00001 892 Gene3D - 122 375 IPR038718 -
Pral5363g00001 892 MobiDBLite consensus disorder prediction 9 31 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5363g00001 Pral-Chr5363 5606 11702 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5363g00001 586 722 RAD5 or RAD16-like Gene Family AT3G16600 32.394 3.28e-11 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pral5363g00001 SNF2_N 5.7e-55 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5363g00001 K20098 - gmx:100781003 1320.84