Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5362g00015 ATGTTATGCTTAGTATTTGACATGGTTTACCCTGAAAAATTGAACTTTTCGTTGTTTAAGAGGAAGGAACTAGGGTTTTTATTCCAGATTGTGTATGTGTGGTGGGTTGTTCTGCTGTTGCTTCGACCTGCTGCGGGTCTGAGACCATTAAGAGAAAGAACTCGATCATGGAGCGATGAGTGGCTCTTTTCAACGAAAGATGAAAGTGATCAATTTTCACAATGGAACATAACAGGAACTTACAAAGGGACATGGAATTTTTTAGATACTGCAAATGGCTCTTCAAGATTTTCAGACATCAGGAAAACAAATGGCAATTCGGTAATTGAACTATTTAGTACGCCCACAAAAATAACTGGTGTGCATTATGTTCAGGGGGTGGTTATATTCCATGATGTGTTTGACAATGAGTACAATGTTGGTGGTGCTCAAATCAGAGTGGAAGGTGTATATATATGGCCTTTTAAACAGCTTCGAATGGTAGCTAACAGTGGGAAAGAGGGAAATTCAAATCAGGATGAAGATTATATCTTATCTAATCCATATCATCTGCTTGGATTGTTCTCATCTCAGGTATTCCAAGAATCCTCACGAGATAAGACACGGAGAAATAAACATTCTCCATTATATGACATGGAGAAACATTGCAATATTGAAATTGCAGGACAGTTTTCCCGCCTATCAGCATCAAAGAATGATGGGGATCATGATCGATTCCACCTAGGAGGGTTGATGGAGAGTCCCTCAGTGGACGATGATGGGGATTGCTTTTCACCTTTAATGTTAAATGCAACTTCTGTTAACATTGAGGTCTACTATAACAAAGCAGTGAACTACACCTTGATGGTTACCTTTATCTCTTTCTTGCAAGTTCTTCTGTTGATTCGGCAAATGGAACATAGCAACACTCAATCTGGAGCTGCTAAGGTTTCAATAATAATGATTGGCCAACAGGCTATAATGGATGCTTACCTTTGCCTATTACATCTGACTGCAGGAATACTAGTTGAATCCTTATTTAATGCTTTTGCAACTGCTGCTTTTTTCAAGTTTGTGGTCTTCTCAATATTTGAGATGAGGTATCTCCTTGCGATATGGAAGGCAAATCGGCCTCTGAGTAATGGAGAAGGCTGGGAGACAATGAGGCGTGAGCTTTCATCTTTATACATGCGTTTCTATGGGATCCTGGTGGGAGGAATTCTGCTTATGTACCAGTTCCATAATTATTTGAGACCTATACTTCTTCTCATGTACTCATTTTGGATACCTCAGATAATTACCAATGTTATTCGTGATTCACGCAAACCATTGCATCCTCATTATATTTTAGGGATAACTGTCACTCGCCTAGCAGTGCCATTATACATATTTGGTTGCCCCAAAAACTTCATGCGCATTGAACCGGACAAGAGCTGGTGTTTGTGTTTGGCTGTATTTATTGGACTTCAGGCTACAATTCTTCTACTTCAGAACTATCTTGGTTCCCGCTGGTTCATCCCTCGTCAGATTCTGCCCGAGAAATACAGCTATTACAGGAGGTTTGGTCAAACTACAAATCATGCTACTGATTGTGTTATTTGCATGACGGCTATTGATCTTTCTCAGCGATCAAATGATTGCATGGTGACACCTTGTGAGCATTTCTTCCACTCTGGTTGTTTGCAAAGATGGATGGATGTAAAGATGGAGTGCCCTACATGCCGGCGCCCTCTGCCGCCTGCTTAG 1725 0.4058 MLCLVFDMVYPEKLNFSLFKRKELGFLFQIVYVWWVVLLLLRPAAGLRPLRERTRSWSDEWLFSTKDESDQFSQWNITGTYKGTWNFLDTANGSSRFSDIRKTNGNSVIELFSTPTKITGVHYVQGVVIFHDVFDNEYNVGGAQIRVEGVYIWPFKQLRMVANSGKEGNSNQDEDYILSNPYHLLGLFSSQVFQESSRDKTRRNKHSPLYDMEKHCNIEIAGQFSRLSASKNDGDHDRFHLGGLMESPSVDDDGDCFSPLMLNATSVNIEVYYNKAVNYTLMVTFISFLQVLLLIRQMEHSNTQSGAAKVSIIMIGQQAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKANRPLSNGEGWETMRRELSSLYMRFYGILVGGILLMYQFHNYLRPILLLMYSFWIPQIITNVIRDSRKPLHPHYILGITVTRLAVPLYIFGCPKNFMRIEPDKSWCLCLAVFIGLQATILLLQNYLGSRWFIPRQILPEKYSYYRRFGQTTNHATDCVICMTAIDLSQRSNDCMVTPCEHFFHSGCLQRWMDVKMECPTCRRPLPPA 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5362g00015 574 FunFam E3 ubiquitin-protein ligase, putative 510 574 - -
Pral5362g00015 574 SMART ringv_2 523 568 IPR011016 GO:0008270
Pral5362g00015 574 SUPERFAMILY RING/U-box 523 573 - -
Pral5362g00015 574 PANTHER RING ZINC FINGER PROTEIN 134 573 - -
Pral5362g00015 574 SMART ring_2 524 567 IPR001841 -
Pral5362g00015 574 CDD RING-H2_TUL1-like 518 573 - -
Pral5362g00015 574 ProSiteProfiles Zinc finger RING-type profile. 524 568 IPR001841 -
Pral5362g00015 574 Pfam Ring finger domain 523 568 IPR001841 -
Pral5362g00015 574 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 512 574 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5362g00015 Pral-Chr5362 54716 62616 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5362g00015 519 574 C3H Transcription Factor Family AT2G35420 37.500 9.53e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5362g00015 K23788 - cave:132181383 986.482