Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5362g00012 ATGGATGAGACTAAACCAAAGACGGTGGTGGAGAGGGAGGCCTTGGGGGGTTACGAGGAGAAGAAAAATGGAGTCTTCTGGGGGGAAGATGACCAGAGGAAGAAAGTGTCCGTCAAGAAAGGGTCTACCGGCGGCGGAGGAAGTGGTATGCGGTGTTGCCAGGCGGAGAACTGCTCTGCGGAGCTCAGTGATGCGAAGCCGTATCATAAGAGGCACAAGGTGTGCGAATATCATGCCAAGGCTCAGGAAGTGGTCGTTTGCGGCATCCGACAACGTTTTTGCCAGCAATGCAGCAGATTCCATGAGTTGGGTGAGTTTGATGAGACGAAAAGGAGTTGCAGGAGGCGTTTGGCTGGGCACAACGAACGACGAAGGAAGAACTCAGTGGGTGAGGCTCAGGCAGAAGGGTCGGGCCAGAAAAGAACAGGAACTCATCAGCTGAAGGACGGGGTTTGTGGTGATGATAGAACCAGAATCCAGATCACTATATAA 492 0.5285 MDETKPKTVVEREALGGYEEKKNGVFWGEDDQRKKVSVKKGSTGGGGSGMRCCQAENCSAELSDAKPYHKRHKVCEYHAKAQEVVVCGIRQRFCQQCSRFHELGEFDETKRSCRRRLAGHNERRRKNSVGEAQAEGSGQKRTGTHQLKDGVCGDDRTRIQITI 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5362g00012 163 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 36 136 IPR044817 GO:0003677
Pral5362g00012 163 ProSiteProfiles Zinc finger SBP-type profile. 50 127 IPR004333 GO:0003677
Pral5362g00012 163 MobiDBLite consensus disorder prediction 117 151 - -
Pral5362g00012 163 SUPERFAMILY SBT domain 51 130 IPR036893 GO:0003677|GO:0005634
Pral5362g00012 163 Gene3D - 44 114 IPR036893 GO:0003677|GO:0005634
Pral5362g00012 163 Pfam SBP domain 53 126 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5362g00012 Pral-Chr5362 42531 43989 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5362g00012 33 140 SBP-box Gene Family AT1G53160 61.111 5.07e-41 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pral5362g00012 SBP 1.4e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5362g00012 - - jre:108986645 192.586