Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5362g00009 ATGAGCAGCGTCTGTGCTGATCAGCACAAGTTTCTTCCCTTCTCTCCCAAGAAATCCCTCCCCGACATCCCTCCCCGCAAGCTCCTCACTCGCCGTTCTGCCGCCTCCGCCATCCACGACCCCGACATGTTCCCTGACTCCCCCCGCTTTTCCTCCTCCGACGAGGCTTTCCTTCACAAGTTTCTCCCTCGAAACAACCTCAACGTCGACTCTGACGACGATGATTCTGATCCCTATTCCTCTGACCACTTCCGCATGTACGAGTTCAAGGTCCGCCGCTGCACCCGCAGCCGCAGCCACGACTGGACTGACTGCCCCTTTGCTCACCCCGGTGAGAAGGCCCGCCGCCGCGACCCCCGCCGTTTTCATTACTCCGGCACTGTCTGCCCCGAGTATCGACGCGGTGGGTGCAGCCGCGGTGATAGCTGCGAGTTTGCGCACGGCGTGTTCGAGTGTTGGCTTCACCCTGCCAGGTACAGAACTGAGGCTTGTAAAGATGGGAAGAATTGTAAGCGAAAGGTGTGTTTCTTCGCTCACACACCTCGCCAGCTGAGAATTTTGCCTGTTAATTCTCAGTCCCATGATTCTTCATCTGCCGACCATCACGCTTCGTGCAAGAATCATAATAAATTCCTGAACCCCACCTCTGGATCCAACAATTGCTGCTTGTTTTGTCATCGTTGCGCTGCTGGTTCTACCTCATCTCCAACATCCACGCTGTTTGGAATGTCCCATATGTCACCGCCACTTTCTCCGTCGTCTTCCCCTGTTTCACCGCCTCTTTCACCGGTGAAACGCCGGTCGATTGTGAATGGAGTGTCACCAATCTCTCGATATTGTGACAGACTTGCAGGATGCGAGACATTGTCATCCAGTAGGCTGATGAATAGTCATGGGCTGGCGAGCTATAAGGATGCTCTCACTGAATTAATGAGCTCCTTGGAGGGTCTGAATTTCATTGAAGCCAACGCTTCGCCTGTTTCTGCCACAAAATCCCTAAATCTTCCATGGCTTGACATGTCTTTGATTAACTGTGAAGACCAGCAGCAGCAGTTCATTCTTTCACCCGGCGCTTCTTTTAGCTTTGAAGATCAGCAGCAACAGTTTATTCTTTCGCCATCTGCTCATAGTTCTCCAACAACATCTTCTGTTTCTTCAAGCTTCTCCAATGGGAAATTGTATCCAAACAGTACATATCTCAGCAGTGAAAGCAAGGCTGTTTCAACTGATAACGGGTCCTCTTGCTCAGCCCCAGATCTCGGCTGGGTCAACGAGCTGCTGATGTAG 1287 0.5221 MSSVCADQHKFLPFSPKKSLPDIPPRKLLTRRSAASAIHDPDMFPDSPRFSSSDEAFLHKFLPRNNLNVDSDDDDSDPYSSDHFRMYEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGTVCPEYRRGGCSRGDSCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHTPRQLRILPVNSQSHDSSSADHHASCKNHNKFLNPTSGSNNCCLFCHRCAAGSTSSPTSTLFGMSHMSPPLSPSSSPVSPPLSPVKRRSIVNGVSPISRYCDRLAGCETLSSSRLMNSHGLASYKDALTELMSSLEGLNFIEANASPVSATKSLNLPWLDMSLINCEDQQQQFILSPGASFSFEDQQQQFILSPSAHSSPTTSSVSSSFSNGKLYPNSTYLSSESKAVSTDNGSSCSAPDLGWVNELLM 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5362g00009 428 PANTHER UNKEMPT FAMILY MEMBER 33 427 IPR045234 -
Pral5362g00009 428 FunFam Zinc finger CCCH domain-containing protein 66 81 149 - -
Pral5362g00009 428 Gene3D - 124 187 - -
Pral5362g00009 428 SMART c3hfinal6 158 181 IPR000571 GO:0046872
Pral5362g00009 428 SMART c3hfinal6 123 149 IPR000571 GO:0046872
Pral5362g00009 428 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 128 148 IPR000571 GO:0046872
Pral5362g00009 428 ProSiteProfiles Zinc finger C3H1-type profile. 124 150 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5362g00009 Pral-Chr5362 30205 31491 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5362g00009 75 185 C2H2 Transcription Factor Family AT5G07500 68.468 8.90e-53 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pral5362g00009 zf-CCCH 1.2e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5362g00009 K23047 - qsa:O6P43_028831 480.715