Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5361g00002 ATGGCGGAGGAGAGATCAACTGGTGTGGTTCAGTGGTTCAGCGATTCCAAAGGCTTTGGCTTTATCAAGCCGGACGATGGAGGGGAAGATCTCTTCGTTCATCAATCTTCCATCAGATCCGAAGGATATCGTAGTCTTGTAGAAGGCGATCGTGTCGAGTTCGTGATTGCCTCTGGCGACAACGACAAAACCAAAGCTATCGATGTTACTGGCCCCGATGGAGCTCCTCTACAGTCCAAGAAAGACAATTACGGTGGTCGCGATGGGGGCTATGGCTTTAGCGGTGGATGGAGAGGCGGGGATAGGCGTAACAGTGGGGGAGCTAGCGGTGCTGGTTGCTATCAGTGCGGCGATGTTGGCCACTTAGCCAGAGATTGCAACCGCGGCAATAATGCCGGTGGCCCATCTTGTTTTAAATGTGGCGAAGTTGGGCACTTGGCTAGGGACTGTTCACTTGGAAATAATGGCGGCGGCGGCGGGGCTTGCTTTAGGTGTCATGAGTATGGGCATATGGCGCGGGACTGCACCAGGGGAAGCGGTGGGAGCGGTGGAGGTTGCTTCACATGTGGTGAAGTGGGTCACTTGGCCAGGGATTGCACCAAGGACAGCGGAAGGTATGGAGGCGGCGGCACCCGAGGAAATACATGCTTTAATTGTGGGAGGCGTGGGCATTTTGCGCGAGACTGCCCTGAAGCCTCTGCATGA 705 0.5518 MAEERSTGVVQWFSDSKGFGFIKPDDGGEDLFVHQSSIRSEGYRSLVEGDRVEFVIASGDNDKTKAIDVTGPDGAPLQSKKDNYGGRDGGYGFSGGWRGGDRRNSGGASGAGCYQCGDVGHLARDCNRGNNAGGPSCFKCGEVGHLARDCSLGNNGGGGGACFRCHEYGHMARDCTRGSGGSGGGCFTCGEVGHLARDCTKDSGRYGGGGTRGNTCFNCGRRGHFARDCPEASA 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5361g00002 234 ProSiteProfiles Zinc finger CCHC-type profile. 113 126 IPR001878 GO:0003676|GO:0008270
Pral5361g00002 234 Pfam Zinc knuckle 136 151 IPR001878 GO:0003676|GO:0008270
Pral5361g00002 234 Pfam Zinc knuckle 112 126 IPR001878 GO:0003676|GO:0008270
Pral5361g00002 234 Pfam Zinc knuckle 161 176 IPR001878 GO:0003676|GO:0008270
Pral5361g00002 234 Pfam Zinc knuckle 185 201 IPR001878 GO:0003676|GO:0008270
Pral5361g00002 234 Pfam Zinc knuckle 214 231 IPR001878 GO:0003676|GO:0008270
Pral5361g00002 234 Gene3D - 208 234 - -
Pral5361g00002 234 Gene3D - 133 157 - -
Pral5361g00002 234 Gene3D - 181 207 - -
Pral5361g00002 234 Gene3D - 158 180 - -
Pral5361g00002 234 ProSiteProfiles Zinc finger CCHC-type profile. 137 150 IPR001878 GO:0003676|GO:0008270
Pral5361g00002 234 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676
Pral5361g00002 234 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
Pral5361g00002 234 SUPERFAMILY Retrovirus zinc finger-like domains 155 202 IPR036875 GO:0003676|GO:0008270
Pral5361g00002 234 SMART csp_8 7 72 IPR011129 GO:0003676
Pral5361g00002 234 Gene3D - 1 83 IPR012340 -
Pral5361g00002 234 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Pral5361g00002 234 PANTHER COLD SHOCK DOMAIN PROTEIN 2 179 231 - -
Pral5361g00002 234 Gene3D - 97 132 - -
Pral5361g00002 234 CDD CSP_CDS 7 71 IPR002059 GO:0003676
Pral5361g00002 234 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Pral5361g00002 234 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676
Pral5361g00002 234 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Pral5361g00002 234 SUPERFAMILY Nucleic acid-binding proteins 3 71 IPR012340 -
Pral5361g00002 234 SUPERFAMILY Retrovirus zinc finger-like domains 204 231 IPR036875 GO:0003676|GO:0008270
Pral5361g00002 234 ProSiteProfiles Zinc finger CCHC-type profile. 216 231 IPR001878 GO:0003676|GO:0008270
Pral5361g00002 234 ProSiteProfiles Zinc finger CCHC-type profile. 186 201 IPR001878 GO:0003676|GO:0008270
Pral5361g00002 234 SMART c2hcfinal6 215 231 IPR001878 GO:0003676|GO:0008270
Pral5361g00002 234 SMART c2hcfinal6 161 177 IPR001878 GO:0003676|GO:0008270
Pral5361g00002 234 SMART c2hcfinal6 136 152 IPR001878 GO:0003676|GO:0008270
Pral5361g00002 234 SMART c2hcfinal6 112 128 IPR001878 GO:0003676|GO:0008270
Pral5361g00002 234 SMART c2hcfinal6 185 201 IPR001878 GO:0003676|GO:0008270
Pral5361g00002 234 SUPERFAMILY Retrovirus zinc finger-like domains 105 152 IPR036875 GO:0003676|GO:0008270
Pral5361g00002 234 ProSiteProfiles Zinc finger CCHC-type profile. 162 177 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5361g00002 Pral-Chr5361 7296 8331 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Pral5361g00002 CSD 1.5e-24 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5361g00002 K09250 - qsa:O6P43_033606 309.301