Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5356g00080 ATGGGTGGAAAATGTCCACATAGAAGCGTAAAGAAGCGAAGGTATTCTCACAAGACGGCTCGTCGCACCAAATTCCTCCACAAGGGAGATGATATGGTTTATGATGAGCTGAAGATGCCGAATGAAGAGAAGCAGCGATTACCTTTAGATGAAGATTTACCTGGGATGGGCCAGTTTTACTGCCTTCACTGCGATCGATACTTCTCCAATGTGGCCGTGAGGGATGAGCATTTTAGGACCAAACGGCACAAGAAACGTGTAAAACAAATGATGGGACCTGCACCACATACTCAACTTGATGCCGAATTAGCTGCAGGGATGGGCATGCCAGATAATGGCCCAAAGCTTATGTCTATGTGA 360 0.4639 MGGKCPHRSVKKRRYSHKTARRTKFLHKGDDMVYDELKMPNEEKQRLPLDEDLPGMGQFYCLHCDRYFSNVAVRDEHFRTKRHKKRVKQMMGPAPHTQLDAELAAGMGMPDNGPKLMSM 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5356g00080 119 PANTHER EXPRESSED PROTEIN 1 119 - -
Pral5356g00080 119 SMART ZnF_U1_5 56 90 IPR003604 GO:0003676|GO:0008270
Pral5356g00080 119 MobiDBLite consensus disorder prediction 1 20 - -
Pral5356g00080 119 SUPERFAMILY beta-beta-alpha zinc fingers 47 110 IPR036236 -
Pral5356g00080 119 Pfam Zinc-finger double-stranded RNA-binding 58 84 IPR022755 -
Pral5356g00080 119 Gene3D Classic Zinc Finger 45 109 - -
Pral5356g00080 119 ProSitePatterns Zinc finger C2H2 type domain signature. 61 83 IPR013087 -
Pral5356g00080 119 FunFam Zinc finger protein 593 45 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5356g00080 Pral-Chr5356 340669 342339 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5356g00080 3 118 C2H2 Transcription Factor Family AT2G36930 76.724 2.06e-62 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5356g00080 K14821 - qsa:O6P43_010258 233.417