Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5356g00068 ATGAACAAGGTTGTGAGAAACAACCTTAGGGTTAGGCTCGGTGATGTTGTTTCTGTCCATCAGTGTGCTGATGTCAAATATGGCAAGCGAGTCCACATTCTTCCTATTGATGACACTATTGAAGGGGTGACCGGAAGTCTCTTTGACGCATACTTAAAACCTTATTTTCTGGAGGCATATCGCCCAGTGAGGAAGGGCGACTTATTCCTTGTCAGAGGGGGGATGAGAAGTGTAGAATTCAAGATTATTGAAACTGACCCTCCGGAGTATTGTGTTGTTGCACCAGACACTGAGATCTTTTGCGAAGGAGAGCCTGTGAAGAGGGAAGATGAGGATAGGTTAGATGATGTTGGTTATGATGATGTTGGTGGCGTAAGAAAGCAGATGGCCCAGATAAGGGAATTGGTGGAATTGCCACTGAGGCATCCACAATTATTCAAGTCCATTGGTGTTAAGCCACCGAAAGGGATTTTGTTGTATGGGCCACCTGGGTCAGGCAAGACTTTAATTGCCCGAGCTGTTGCAAATGAAACTGGTGCCTTCTTTTTCTGCATTAATGGACCTGAGATCATGTCAAAATTGGCTGGTGAGAGTGAAAGCAACCTGAGGAAGGCATTTGAGGAAGCTGAAAAGAATGCACCATCTATCATCTTCATAGATGAGATAGATTCTATAGCTCCCAAGAGGGAGAAGACTCATGGAGAAGTTGAGAGAAGGATTGTATCCCAGCTGTTGACACTCATGGATGGGCTAAAAGCACGTGCACATGTAATTGTTATTGGAGCCACAAATCGTCCGAACAGCATTGACCCTGCTCTTAGGAGGTTTGGAAGGTTTGACCGGGAGATAGATATCGGTGTTCCAGATGAAGTTGGCCGTCTTGAGGTGCTACGTATCCACACAAAGAATATGAAGCTTGCTGAAGATGTTGATTTGGAAAAAATTTCGAAGAATACGCATGGCTATGTTGGTGCTGATCTTGCTGCTCTGTGTACTGAAGCTGCCCTTCAATGCATCAGAGAGAAAATGGATGTGATTGACCTGGAAGATGAAACAATTGATGCTGAGATACTGAACTCAATGGCTGTGACAAATGAACATTTTCAGACTGCTCTCGGATCAAGCAACCCTTCTGCTCTCCGTGAAACAGTTGTTGAAGTGCCCAATGTCAGCTGGGATGATATTGGTGGCCTTGAGAACGTTAAGAGAGAACTCCAAGAGACTGTTCAATATCCCGTGGAACACCCTGAAAAATTCGAGAAGTTTGGAATGTCCCCATCAAAGGGGGTTCTTTTCTATGGGCCTCCTGGATGTGGAAAGACGCTTTTGGCTAAAGCTATTGCCAATGAATGCCAGGCAAACTTCATCAGTGTTAAAGGTCCTGAGCTACTTACAATGTGGTTTGGAGAAAGTGAGGCTAATGTGCGGGAAATATTTGACAAGGCCCGTGGTTCTGCTCCATGTGTCCTGTTCTTTGATGAACTTGACTCAATTGCAACTCAGAGAGGTAGCAGTGTAGGAGATGCTGGGGGTGCTGCTGACAGGGTTTTGAATCAACTCCTTACAGAAATGGATGGGATGTCAGCTAAGAAAACTGTGTTCATCATTGGGGCCACCAACCGACCGGACATCATAGACCCTGCACTTCTGCGCCCTGGTCGTCTAGACCAGTTGATCTATATCCCCCTCCCAGATGAGGAATCCCGCTATCAGATATTTAAATCTTGCCTGCGAAAATCCCCCGTTGCAAAGGATGTTGATCTTAGAGCTCTTGCCAAGTATACTCAGGGCTTTAGTGGTGCTGATATTACTGAGATTTGCCAGCGTGCATGCAAGTATGCCATACGAGAGAACATTGAAAAGGACATTGAAAGAGAACGGAGGAGAAGTGAGAATCCAGAGGCGATGGAGGAGGATGTGGAAGATGAGGTGGCGGAAATTAAGGCCGCTCATTTCGAGGAATCCATGAAGTATGCTCGGAGGAGTGTAAGTGATGCTGACATTCGCAAGTACCAGGCATTTGCCCAAACATTACAGCAGTCCAGAGGATTCGGAACGGAGTTCAGGTTCCCTGACAGCGGCTCTGCCGGTGCTGCTACCGCCTCGGCCGACCCTTTTGCAGCTGCTGGCGCGGTTGATGATGATGATCTTTACAGTTAG 2160 0.4653 MNKVVRNNLRVRLGDVVSVHQCADVKYGKRVHILPIDDTIEGVTGSLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKIIETDPPEYCVVAPDTEIFCEGEPVKREDEDRLDDVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKARAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEDVDLEKISKNTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTNEHFQTALGSSNPSALRETVVEVPNVSWDDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARGSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRYQIFKSCLRKSPVAKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSENPEAMEEDVEDEVAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGTEFRFPDSGSAGAATASADPFAAAGAVDDDDLYS 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5356g00068 719 Pfam ATPase family associated with various cellular activities (AAA) 157 286 IPR003959 GO:0005524|GO:0016887
Pral5356g00068 719 Pfam ATPase family associated with various cellular activities (AAA) 430 563 IPR003959 GO:0005524|GO:0016887
Pral5356g00068 719 Gene3D - 380 563 IPR027417 -
Pral5356g00068 719 SMART CDC48_2_2 42 108 IPR004201 -
Pral5356g00068 719 Pfam AAA+ lid domain 309 351 IPR041569 -
Pral5356g00068 719 Pfam AAA+ lid domain 585 625 IPR041569 -
Pral5356g00068 719 FunFam Transitional endoplasmic reticulum ATPase 380 563 - -
Pral5356g00068 719 CDD RecA-like_CDC48_r2-like 401 561 - -
Pral5356g00068 719 Gene3D - 1 24 - -
Pral5356g00068 719 Gene3D - 567 675 - -
Pral5356g00068 719 FunFam Cell division control 48 288 379 - -
Pral5356g00068 719 Gene3D - 25 121 - -
Pral5356g00068 719 Gene3D - 288 379 - -
Pral5356g00068 719 Pfam Cell division protein 48 (CDC48), domain 2 44 107 IPR004201 -
Pral5356g00068 719 SUPERFAMILY Cdc48 domain 2-like 24 116 IPR029067 -
Pral5356g00068 719 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 388 676 IPR027417 -
Pral5356g00068 719 NCBIfam CDC48 family AAA ATPase 2 679 IPR005938 GO:0016787
Pral5356g00068 719 FunFam Transitional endoplasmic reticulum ATPase 118 286 - -
Pral5356g00068 719 ProSitePatterns AAA-protein family signature. 257 275 IPR003960 GO:0005524|GO:0016887
Pral5356g00068 719 SMART AAA_5 153 289 IPR003593 GO:0016887
Pral5356g00068 719 SMART AAA_5 426 565 IPR003593 GO:0016887
Pral5356g00068 719 CDD RecA-like_CDC48_r1-like 121 286 - -
Pral5356g00068 719 PANTHER AAA-FAMILY ATPASE 314 681 - -
Pral5356g00068 719 MobiDBLite consensus disorder prediction 685 706 - -
Pral5356g00068 719 FunFam Cell division control 48 25 121 - -
Pral5356g00068 719 ProSitePatterns AAA-protein family signature. 533 551 IPR003960 GO:0005524|GO:0016887
Pral5356g00068 719 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 116 378 IPR027417 -
Pral5356g00068 719 Gene3D - 122 286 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5356g00068 Pral-Chr5356 293462 297595 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5356g00068 359 622 Calmodulin-binding Proteins AT3G56690 47.727 6.91e-80 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5356g00068 K13525 - gmx:100814141 1330.08