Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pral5356g00068 | ATGAACAAGGTTGTGAGAAACAACCTTAGGGTTAGGCTCGGTGATGTTGTTTCTGTCCATCAGTGTGCTGATGTCAAATATGGCAAGCGAGTCCACATTCTTCCTATTGATGACACTATTGAAGGGGTGACCGGAAGTCTCTTTGACGCATACTTAAAACCTTATTTTCTGGAGGCATATCGCCCAGTGAGGAAGGGCGACTTATTCCTTGTCAGAGGGGGGATGAGAAGTGTAGAATTCAAGATTATTGAAACTGACCCTCCGGAGTATTGTGTTGTTGCACCAGACACTGAGATCTTTTGCGAAGGAGAGCCTGTGAAGAGGGAAGATGAGGATAGGTTAGATGATGTTGGTTATGATGATGTTGGTGGCGTAAGAAAGCAGATGGCCCAGATAAGGGAATTGGTGGAATTGCCACTGAGGCATCCACAATTATTCAAGTCCATTGGTGTTAAGCCACCGAAAGGGATTTTGTTGTATGGGCCACCTGGGTCAGGCAAGACTTTAATTGCCCGAGCTGTTGCAAATGAAACTGGTGCCTTCTTTTTCTGCATTAATGGACCTGAGATCATGTCAAAATTGGCTGGTGAGAGTGAAAGCAACCTGAGGAAGGCATTTGAGGAAGCTGAAAAGAATGCACCATCTATCATCTTCATAGATGAGATAGATTCTATAGCTCCCAAGAGGGAGAAGACTCATGGAGAAGTTGAGAGAAGGATTGTATCCCAGCTGTTGACACTCATGGATGGGCTAAAAGCACGTGCACATGTAATTGTTATTGGAGCCACAAATCGTCCGAACAGCATTGACCCTGCTCTTAGGAGGTTTGGAAGGTTTGACCGGGAGATAGATATCGGTGTTCCAGATGAAGTTGGCCGTCTTGAGGTGCTACGTATCCACACAAAGAATATGAAGCTTGCTGAAGATGTTGATTTGGAAAAAATTTCGAAGAATACGCATGGCTATGTTGGTGCTGATCTTGCTGCTCTGTGTACTGAAGCTGCCCTTCAATGCATCAGAGAGAAAATGGATGTGATTGACCTGGAAGATGAAACAATTGATGCTGAGATACTGAACTCAATGGCTGTGACAAATGAACATTTTCAGACTGCTCTCGGATCAAGCAACCCTTCTGCTCTCCGTGAAACAGTTGTTGAAGTGCCCAATGTCAGCTGGGATGATATTGGTGGCCTTGAGAACGTTAAGAGAGAACTCCAAGAGACTGTTCAATATCCCGTGGAACACCCTGAAAAATTCGAGAAGTTTGGAATGTCCCCATCAAAGGGGGTTCTTTTCTATGGGCCTCCTGGATGTGGAAAGACGCTTTTGGCTAAAGCTATTGCCAATGAATGCCAGGCAAACTTCATCAGTGTTAAAGGTCCTGAGCTACTTACAATGTGGTTTGGAGAAAGTGAGGCTAATGTGCGGGAAATATTTGACAAGGCCCGTGGTTCTGCTCCATGTGTCCTGTTCTTTGATGAACTTGACTCAATTGCAACTCAGAGAGGTAGCAGTGTAGGAGATGCTGGGGGTGCTGCTGACAGGGTTTTGAATCAACTCCTTACAGAAATGGATGGGATGTCAGCTAAGAAAACTGTGTTCATCATTGGGGCCACCAACCGACCGGACATCATAGACCCTGCACTTCTGCGCCCTGGTCGTCTAGACCAGTTGATCTATATCCCCCTCCCAGATGAGGAATCCCGCTATCAGATATTTAAATCTTGCCTGCGAAAATCCCCCGTTGCAAAGGATGTTGATCTTAGAGCTCTTGCCAAGTATACTCAGGGCTTTAGTGGTGCTGATATTACTGAGATTTGCCAGCGTGCATGCAAGTATGCCATACGAGAGAACATTGAAAAGGACATTGAAAGAGAACGGAGGAGAAGTGAGAATCCAGAGGCGATGGAGGAGGATGTGGAAGATGAGGTGGCGGAAATTAAGGCCGCTCATTTCGAGGAATCCATGAAGTATGCTCGGAGGAGTGTAAGTGATGCTGACATTCGCAAGTACCAGGCATTTGCCCAAACATTACAGCAGTCCAGAGGATTCGGAACGGAGTTCAGGTTCCCTGACAGCGGCTCTGCCGGTGCTGCTACCGCCTCGGCCGACCCTTTTGCAGCTGCTGGCGCGGTTGATGATGATGATCTTTACAGTTAG | 2160 | 0.4653 | MNKVVRNNLRVRLGDVVSVHQCADVKYGKRVHILPIDDTIEGVTGSLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKIIETDPPEYCVVAPDTEIFCEGEPVKREDEDRLDDVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKARAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEDVDLEKISKNTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTNEHFQTALGSSNPSALRETVVEVPNVSWDDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARGSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRYQIFKSCLRKSPVAKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSENPEAMEEDVEDEVAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGTEFRFPDSGSAGAATASADPFAAAGAVDDDDLYS | 719 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pral5356g00068 | 719 | Pfam | ATPase family associated with various cellular activities (AAA) | 157 | 286 | IPR003959 | GO:0005524|GO:0016887 | |
Pral5356g00068 | 719 | Pfam | ATPase family associated with various cellular activities (AAA) | 430 | 563 | IPR003959 | GO:0005524|GO:0016887 | |
Pral5356g00068 | 719 | Gene3D | - | 380 | 563 | IPR027417 | - | |
Pral5356g00068 | 719 | SMART | CDC48_2_2 | 42 | 108 | IPR004201 | - | |
Pral5356g00068 | 719 | Pfam | AAA+ lid domain | 309 | 351 | IPR041569 | - | |
Pral5356g00068 | 719 | Pfam | AAA+ lid domain | 585 | 625 | IPR041569 | - | |
Pral5356g00068 | 719 | FunFam | Transitional endoplasmic reticulum ATPase | 380 | 563 | - | - | |
Pral5356g00068 | 719 | CDD | RecA-like_CDC48_r2-like | 401 | 561 | - | - | |
Pral5356g00068 | 719 | Gene3D | - | 1 | 24 | - | - | |
Pral5356g00068 | 719 | Gene3D | - | 567 | 675 | - | - | |
Pral5356g00068 | 719 | FunFam | Cell division control 48 | 288 | 379 | - | - | |
Pral5356g00068 | 719 | Gene3D | - | 25 | 121 | - | - | |
Pral5356g00068 | 719 | Gene3D | - | 288 | 379 | - | - | |
Pral5356g00068 | 719 | Pfam | Cell division protein 48 (CDC48), domain 2 | 44 | 107 | IPR004201 | - | |
Pral5356g00068 | 719 | SUPERFAMILY | Cdc48 domain 2-like | 24 | 116 | IPR029067 | - | |
Pral5356g00068 | 719 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 388 | 676 | IPR027417 | - | |
Pral5356g00068 | 719 | NCBIfam | CDC48 family AAA ATPase | 2 | 679 | IPR005938 | GO:0016787 | |
Pral5356g00068 | 719 | FunFam | Transitional endoplasmic reticulum ATPase | 118 | 286 | - | - | |
Pral5356g00068 | 719 | ProSitePatterns | AAA-protein family signature. | 257 | 275 | IPR003960 | GO:0005524|GO:0016887 | |
Pral5356g00068 | 719 | SMART | AAA_5 | 153 | 289 | IPR003593 | GO:0016887 | |
Pral5356g00068 | 719 | SMART | AAA_5 | 426 | 565 | IPR003593 | GO:0016887 | |
Pral5356g00068 | 719 | CDD | RecA-like_CDC48_r1-like | 121 | 286 | - | - | |
Pral5356g00068 | 719 | PANTHER | AAA-FAMILY ATPASE | 314 | 681 | - | - | |
Pral5356g00068 | 719 | MobiDBLite | consensus disorder prediction | 685 | 706 | - | - | |
Pral5356g00068 | 719 | FunFam | Cell division control 48 | 25 | 121 | - | - | |
Pral5356g00068 | 719 | ProSitePatterns | AAA-protein family signature. | 533 | 551 | IPR003960 | GO:0005524|GO:0016887 | |
Pral5356g00068 | 719 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 116 | 378 | IPR027417 | - | |
Pral5356g00068 | 719 | Gene3D | - | 122 | 286 | IPR027417 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pral5356g00068 | Pral-Chr5356 | 293462 | 297595 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pral5356g00068 | 359 | 622 | Calmodulin-binding Proteins | AT3G56690 | 47.727 | 6.91e-80 | 273 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pral5356g00068 | K13525 | - | gmx:100814141 | 1330.08 |