Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5356g00060 ATGTCTACCTCCGCCGCTTCCTTAGCCCTTCCTACATTCACCTCAGGGTTCCGGTCACTTAACTTTGCCAGACAAGCCTTGTTCTTTCCACATTCTGAATCTTCCTCGTCTCTCCGGTTGAATTCGAAGCCCCTTTCTTTGTCTGTCTCTTTTCTTCCATTCCACGCGCCTTCTGCCTCTCGATTTATCCCCAATGTTGCTCTCTCTTCTGAGTTCGAACAAGAGGAGATGGTGACTGATGAAGACGAGCCTAGCTACTCCCCCGACCTCAAACTCTTCGTGGGTAATCTTCCCTTCAGCGTTGACAGTGCCCAACTCGCTGAATTGTTCGAGAGCGCTGGAACTGTCGAGATGGTTGAGGTAATTTATGATAAAGTGACCGGAAGAAGCAGGGGGTTTGGTTTTGTGACCATGTCCACCTCCGAGGAAGTTGAAGCAGCCGCTCAACAATTCAATGGCTACGAACTTGATGGGCGGGCATTGAGAGTAAATTTTGGACCTCCTCCCCGGAAGGAGAATGCCCCCTTCAGAGGTTCCAGAGGTGGCTTTGCTTCGGATACTGGAAACCGTGTTCATGTCGGTAATCTTGCATGGGGTGTAGATAACTTGGCGCTTGAGAATCTGTTTGCTGAGCAGGGAAAGGTTTTAGAAGCGAAGGTGATTTATGACAGAGAGAGTGGAAGGTCAAGAGGATTTGGATTTGTGACTTACAGCAGTGCTGAAGAGGTCAGCGGTGCTATTGAGTCCTTAGATGGTGTGGACTTGAATGGCAGAGCTATTAGAGTGTCATTAGCTGATGCCAAGCCAAGGCGTCCGTTTTGA 822 0.4927 MSTSAASLALPTFTSGFRSLNFARQALFFPHSESSSSLRLNSKPLSLSVSFLPFHAPSASRFIPNVALSSEFEQEEMVTDEDEPSYSPDLKLFVGNLPFSVDSAQLAELFESAGTVEMVEVIYDKVTGRSRGFGFVTMSTSEEVEAAAQQFNGYELDGRALRVNFGPPPRKENAPFRGSRGGFASDTGNRVHVGNLAWGVDNLALENLFAEQGKVLEAKVIYDRESGRSRGFGFVTYSSAEEVSGAIESLDGVDLNGRAIRVSLADAKPRRPF 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5356g00060 273 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 90 168 IPR000504 GO:0003723
Pral5356g00060 273 SMART rrm1_1 190 263 IPR000504 GO:0003723
Pral5356g00060 273 SMART rrm1_1 91 164 IPR000504 GO:0003723
Pral5356g00060 273 FunFam Ribonucleoprotein A, chloroplastic 68 185 - -
Pral5356g00060 273 Gene3D - 68 185 IPR012677 -
Pral5356g00060 273 Gene3D - 186 272 IPR012677 -
Pral5356g00060 273 PANTHER OS02G0815200 PROTEIN 33 267 - -
Pral5356g00060 273 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 189 267 IPR000504 GO:0003723
Pral5356g00060 273 SUPERFAMILY RNA-binding domain, RBD 84 189 IPR035979 GO:0003676
Pral5356g00060 273 SUPERFAMILY RNA-binding domain, RBD 186 271 IPR035979 GO:0003676
Pral5356g00060 273 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 92 162 IPR000504 GO:0003723
Pral5356g00060 273 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 192 261 IPR000504 GO:0003723
Pral5356g00060 273 CDD RRM2_NsCP33_like 190 265 - -
Pral5356g00060 273 FunFam 28 kDa ribonucleoprotein, chloroplastic 186 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5356g00060 Pral-Chr5356 226425 228833 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5356g00060 92 271 Eukaryotic Initiation Factors Gene Family AT1G49760 28.108 1.61e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5356g00060 - - hbr:110667283 352.443