Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5356g00059 ATGTCAAAGCCGGCCTATAAGATGAATGGCAAACAGATGGATTTATGGAAGGAAAGGGAGCTTTCTAGGGTCTTCTCTGAGGATTATGATACCACAGAGAAGTTGGTATTGGATCCCAGGGGACCAAGAGTGAACAGATGGAACAAAATCTTCTTGATAGCATGTCTGGTTTCTTTATTTGTGGATCCCTTGTTCTTTTACTTGCCAGTGGCTAAGAAAGACAAATGCATTGATTTATCCCCTCGCCTCGAAGTGTCCCTCACCATAATTCGCTCCATGGTGGATGCCTTTTACATATTCCAGATTTATGTCCGGTTTCAAACTGCCTATGTTGCTCCTTCCTCTCGCGTTTTTGGTAGAGGAGAGCTCATTATCGACCCTTCCAGGATATCATCCAAGTATCTTCAAAGAGACTTCTGGCTTGATATTATGGCTGCCCAGCCCTTTCCTCAGGTGTTAATATGGCTTGTAATTCCGAATCTCAAGTGTTCACAAATGATTACTTCAAGGCATATACTACGCCTTGCAACCATTTTCCAGTACCTTTTAAGGTTATATCTCATCTTCCCTCTATCATCACAAATCGTCAAGGCGAAGGGGGTAATGATGGAAAAAGCTTGGGCTGGGGCAGCATATCATCTCGTGCTGTATATGCTGGCAAGTCATGTTTTAGGGTCGTGCTGGTACCTCTTAGCCATTGAAAGGCAGGAGGAGTGCTGGAAAAAAGTTTGTACTCTTCAACGCCCACATTGCCAGTATTATTATCTGGAGTGTGGCAGCGTTGGTGATCCGGATAGGGTAGCTTGGTTCAGAGCAAGCAATGTCTCGGGTCTATGTGATCCCAACAATAATTTCTTTCAATTTGGCATTTTTGCTGATGCGCTGACTCTGGGAATCACGGGCTCCGAGTTCTTCATCAAATACTTCTACTGTCTTTGGTGGGGACTCAGGAATCTCAGCTCTCTGGGACAGAACCTCTTGACAAGCACTCATGTTGCAGAGATTAATTTTGCTGTGATCATAGCAATTCTAGGCCTGGTACTTTTCGCCCAGCTTATAGGCAACATGCAGATGTACCTGCAATCGACAACCATGAGGCTGGAAGAATGGAGAACAAGAAGGACAGATATAGAGAGATGGATGCGCCACAGGCAGCTACCATATGAGCTGAAGAAAAATGTTCGGCGACACGAGCAATTCAGATGGGTTGCCACACGTGGAGTTGACGAGGAAGTCATTCTCAGAGACCTTCCTGCTGATCTCAGACGCGACATCAAACGTCACCTCTGCCTCAATCTAGTCCGACAAGTACCACTATTTGATCAGATGGACGAGAGGATGCTGGATGCGATATGCGAAAGGCTGAAGCCATCTCTATGCACCCCAGGGACAAGGCTCGTTCGCGAAGGTGACCCACTGAATGAGATGCTCTTCATAGTTCGAGGTCGCTTGGATTCACACACAACCAATGGTGGCAGAACTGGGTTCTTCAATTCCTGCAGAATAGGGGCAGGTGATTTCTGTGGCGAAGAACTGTTGCCGTGGGTTCTGGACCCTCGTCCGAGCGCAGTGCTTCCTTCATCAACCCGCACAGTGAAAGCCATAACCCATGTGGAAGCTTTTGCACTCATAGCTGAGGACCTACAATTCGTGGCAGATCAGTTCCGGAGGCTACACAGCAAACAATTGAGGCATACCTTTAGGTTTTATTCCCAGCAATGGAGGACATGGGCTGCTTGCTTCATACAAGCAGCTTGGTTTAACTACAAGAGGAGAAGAGAGGCCAGAGAGCTCAGGAAGAAGCAGAATCAATTGGCTTTGTCCACTGTGTCTCCGGGTTATACCGCCATGGAATACTTCTCTGCACCTCTGCAACCCCACATGGAATACTCCACTAATCTCACAAGGTCTCCCCTGAGAGGTGGGAGCTTGCGATATGGTTCTGATCTTGACATTCTTGGTTCATTGAGGAAGCCTGTTGAACCTGACTTCACCATGCAAGATCCACGAAGCACTATATGA 2022 0.4698 MSKPAYKMNGKQMDLWKERELSRVFSEDYDTTEKLVLDPRGPRVNRWNKIFLIACLVSLFVDPLFFYLPVAKKDKCIDLSPRLEVSLTIIRSMVDAFYIFQIYVRFQTAYVAPSSRVFGRGELIIDPSRISSKYLQRDFWLDIMAAQPFPQVLIWLVIPNLKCSQMITSRHILRLATIFQYLLRLYLIFPLSSQIVKAKGVMMEKAWAGAAYHLVLYMLASHVLGSCWYLLAIERQEECWKKVCTLQRPHCQYYYLECGSVGDPDRVAWFRASNVSGLCDPNNNFFQFGIFADALTLGITGSEFFIKYFYCLWWGLRNLSSLGQNLLTSTHVAEINFAVIIAILGLVLFAQLIGNMQMYLQSTTMRLEEWRTRRTDIERWMRHRQLPYELKKNVRRHEQFRWVATRGVDEEVILRDLPADLRRDIKRHLCLNLVRQVPLFDQMDERMLDAICERLKPSLCTPGTRLVREGDPLNEMLFIVRGRLDSHTTNGGRTGFFNSCRIGAGDFCGEELLPWVLDPRPSAVLPSSTRTVKAITHVEAFALIAEDLQFVADQFRRLHSKQLRHTFRFYSQQWRTWAACFIQAAWFNYKRRREARELRKKQNQLALSTVSPGYTAMEYFSAPLQPHMEYSTNLTRSPLRGGSLRYGSDLDILGSLRKPVEPDFTMQDPRSTI 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5356g00059 673 ProSiteProfiles cAMP/cGMP binding motif profile. 439 524 IPR000595 -
Pral5356g00059 673 Pfam Ion transport protein 47 366 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Pral5356g00059 673 PRINTS EAG/ELK/ERG potassium channel family signature 219 229 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pral5356g00059 673 PRINTS EAG/ELK/ERG potassium channel family signature 532 540 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pral5356g00059 673 PRINTS EAG/ELK/ERG potassium channel family signature 308 325 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pral5356g00059 673 PRINTS EAG/ELK/ERG potassium channel family signature 102 111 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pral5356g00059 673 PRINTS EAG/ELK/ERG potassium channel family signature 352 361 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pral5356g00059 673 PRINTS EAG/ELK/ERG potassium channel family signature 334 345 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pral5356g00059 673 PRINTS EAG/ELK/ERG potassium channel family signature 402 409 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pral5356g00059 673 SMART cnmp_10 439 570 IPR000595 -
Pral5356g00059 673 SUPERFAMILY cAMP-binding domain-like 368 561 IPR018490 -
Pral5356g00059 673 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 22 609 - -
Pral5356g00059 673 Gene3D - 49 363 - -
Pral5356g00059 673 SUPERFAMILY Voltage-gated potassium channels 38 361 - -
Pral5356g00059 673 Gene3D Jelly Rolls 437 557 IPR014710 -
Pral5356g00059 673 Gene3D Helix hairpin bin 366 430 - -
Pral5356g00059 673 CDD CAP_ED 439 570 IPR000595 -
Pral5356g00059 673 FunFam Cyclic nucleotide-gated ion channel 1 437 555 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5356g00059 Pral-Chr5356 222432 225108 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5356g00059 17 667 Ion Channels AT2G28260 64.110 0.0 875
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5356g00059 K05391 - gmx:100815543 1049.65