Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5356g00057 ATGATTACATTCCTGGATGTGAAGGAGAAATTGAAAGAAGAGGACAAATGTTTGGATAGTCAACTGTGGCATGCTTGCGCCGGCGCGATGGTACAAATGCCGCCGTTGAACTCCAAGGTGTTTTACTTCCCTCAGGGTCACGCCGAGCATGCAAGTGGGCCCGTGGATTTCAAGAAATGCCGGAGGTTTCCTCTACCACCTTACATTGTATGCAGAGTCGAGTCTGTTAAATACATGGCTGATCCCGAGACAGATGAGGTATACGCAAAACTTAGGCTTCTTCCATTGAATGGGAAGGAGGCTGATTATGATGACGACAACGTTGTTGGAGGAGGCACCGATGGATCTGAAGCTCAAGACAAACTTGCCTCGTTCGCAAAAACTTTGACTCAGTCGGACGCCAACAATGGCGGTGGTTTTTCTGTTCCTAGATACTGTGCAGAGACAATTTTCCCGCGTCTGGACTTTTCTGCGGATCCACCCCTTCAATATATTGAGGCTAAAGATGTTCATGGGGAATCGTGGAAGTTCAAGCACATTTACAGAGGCACACCGAGGCGGCATCTCTTGACCACAGGATGGAGTCCGTTTGTGAACAAGAAAAGGCTTGTTGCCGGGGATTCAATAGTATTTCTAAGAGGACAAGATGGAGATCTCTATGTAGGGATTCGACGAGCTAAAAAAGGAAATGGTCGTCGATTTGAGTCCTCATCAGTGTGGAATTCAGAGGGTGAAAATTGTCCTCTACCTTACGAAGGATTGTCGGCATTCTTGAAGGGAGATGACGGCAAAAAACTGGCGATCAATAATGGTACTGGCAATGGAATGATTGGCACGAGAGGGAATGTTGTGGCCGGTGGGAAAGTGAAAGCCGAAGCAGTTATTGAAGCTGCGACTCTCGCTGCTAATGGACAACCCTTTGAGGTTGTGTACTACCCTAGAGCAAGCACTCCCGAGTTCTGTGTAAAGGCCTCTTCAGTTAAAACAGCCCTTCAAATCAGGTGGTGTTCTGGAATGAGGTTCAAGATGGCTTTTGAGACAGAGGATTCTTCTCGCATAAGTTGGTTCATGGGAACTATATCTTCGGTGCAGGTCGCTGATCCTCTGTTCTGGCCAGATTCACCTTGGAGGCTTCTCGAGGTTACATGGGATGAACCGGATTTACTTCAAAATGTGAAACGGGTGAGCCCGTGGTTGGTTGAATTGGTATCCAACATGCCTGCAATCCCTCCACCTTTCTCGCCACCACGGAAGAAAATGAGGTTGCCTCATCATCCAGATGTTCCGCTTAATACTCAGATTTACGTGCCCACGTTTGGTAGCAATCTCTTAGGTCCCATGAACAATCCCTTTGGGTATCATCTACCTGAAACCACTCCTGCTGGCATGCAGGGAGCCAGGCATGCTTATTATGGTCTACCCTTACCAGATCTCCACCTCAGTAAGTTGCAGTCATCGCCTCTGTATTTGACTTGTTTTCCACCACTTGGCCAAGCTTCTATGCAAACCAGGGTCTGTTATAACTCACCAATGCAGAAGCATGGCGTGAGTGAGAATGTCTCCCACTTGATTTCCAATGAAAATTCTGCCCACTCTTTGAAGGAAGAGGATGATAATAAGGCACCCCACCTTGTGCTTTTTGGGAAAAAAATTCTTCCTGAGAAGAAGATCCCCACGAGCTGCTCTCGTGACGGATTCTCCCAAGTCCTCACTCGTAATAGTTCATTATATGGAAATGCTCATAACGGGGCCAATTTTTCTGATGGTAAGCGCCGGGAATCTGATCAGACTAATTTGGACGGGGGTCACTGTTAG 1815 0.4733 MITFLDVKEKLKEEDKCLDSQLWHACAGAMVQMPPLNSKVFYFPQGHAEHASGPVDFKKCRRFPLPPYIVCRVESVKYMADPETDEVYAKLRLLPLNGKEADYDDDNVVGGGTDGSEAQDKLASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDFSADPPLQYIEAKDVHGESWKFKHIYRGTPRRHLLTTGWSPFVNKKRLVAGDSIVFLRGQDGDLYVGIRRAKKGNGRRFESSSVWNSEGENCPLPYEGLSAFLKGDDGKKLAINNGTGNGMIGTRGNVVAGGKVKAEAVIEAATLAANGQPFEVVYYPRASTPEFCVKASSVKTALQIRWCSGMRFKMAFETEDSSRISWFMGTISSVQVADPLFWPDSPWRLLEVTWDEPDLLQNVKRVSPWLVELVSNMPAIPPPFSPPRKKMRLPHHPDVPLNTQIYVPTFGSNLLGPMNNPFGYHLPETTPAGMQGARHAYYGLPLPDLHLSKLQSSPLYLTCFPPLGQASMQTRVCYNSPMQKHGVSENVSHLISNENSAHSLKEEDDNKAPHLVLFGKKILPEKKIPTSCSRDGFSQVLTRNSSLYGNAHNGANFSDGKRRESDQTNLDGGHC 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5356g00057 604 Gene3D - 122 227 IPR015300 -
Pral5356g00057 604 Pfam Auxin response factor 297 379 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pral5356g00057 604 MobiDBLite consensus disorder prediction 586 604 - -
Pral5356g00057 604 MobiDBLite consensus disorder prediction 580 604 - -
Pral5356g00057 604 CDD B3_DNA 124 225 IPR003340 GO:0003677
Pral5356g00057 604 SUPERFAMILY DNA-binding pseudobarrel domain 118 227 IPR015300 -
Pral5356g00057 604 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 15 559 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pral5356g00057 604 Pfam B3 DNA binding domain 125 226 IPR003340 GO:0003677
Pral5356g00057 604 FunFam Auxin response factor 335 408 - -
Pral5356g00057 604 Gene3D - 334 408 - -
Pral5356g00057 604 FunFam Auxin response factor 123 227 - -
Pral5356g00057 604 SMART B3_2 125 227 IPR003340 GO:0003677
Pral5356g00057 604 ProSiteProfiles B3 DNA-binding domain profile. 125 227 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5356g00057 Pral-Chr5356 202067 205376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5356g00057 15 604 B3 DNA Binding Superfamily AT4G30080 54.455 0.0 577
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pral5356g00057 B3 2e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5356g00057 - - pvy:116123784 786.563