Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5356g00053 ATGCAAGTCCTCTGTGCGCATAGCTTTCGGGGGCTTTCTTCTTCTGTCTTTCTTCAGCTTCTGCTCTTCCTGTGCTCATCTTGCGCATATGGGTTTGGGACGATGGGGCCAATATCGGCCTCATTTGGTAAATATGAATTTTTCTGCGCCATCGATGCAAGTGGGAAGCAGGACGTCATTTGCTGGGGGAAGAACAACACATCATCGGCTCCACCTTCTTCTTCGTCCTCAGCCTCTGTTACTGACAGCTCTCCTATGGCAGCTTTATCCGGCGGCGAAGGTTTCATGTGTGGCATTCTAGCAAACACTTCGCAAGCATACTGCTGGAGTGCTACAAAACCAGCGATAGATCTTGTGCCTCCTGCATACCAATCCTATGCTTATTGGCAAATAGCAGCCGGCAAGAGTCATGTTTGTGCCATCAGGGGATCTTATTATTCTAATGAGGATTTCGGAATTGTTGATTGTTGGGAAATTGTGAGAACTGCGGACGACAGCTTGAAATGGAAACAGAGCGATTTGTATTACGATCAGTCAACTAGCAATCTCGCATTAAACAAGGTTGTAGCAGGTGAGGGATTCTCTTGTGGTGCGGTCAGAGACGGAGGGCTTGTCTGTTGGGGACCTACATCTGCGAGTTTAGGGGTATCGAATGTGTCCGAGAACTTCTCAGTCTTGGTCTCGGGAAGGAGTTCAATATGTGGGCTTTTGAATGTTTCGGGAGATTTGAAATGTTGGGGTGATGCAGATTCGTTTGCTGATCCACCTGATGGGGCCAGATTAATCTCTCTGTCAGCCGGGGCTCGCCATTACTGTGGTATTCGAGCAGATAATCATAGAGTGGAGTGTTGGGGGAGTTTCAACTCGTCTGTGGTTCCAAAAGGTTCTGGATTTATGGCAATTGCTTCTTCGGATTATTCAACTTGTGGCGTTAGAGAAGAAGATCTTCTGATTGATTGCTGGATGGTGAATGCGTCCACGGCCGAGTTTGATCCTCCATTGGAATTATCAAGTCCCGGTCTCTGCAGTTCCAGTTCATGCAGTCAAGGTGAGTTTGCTTTCAATGTTAGTATTCTGAATGAGCCAGGTTTAACAAGCCTTTGCGTTCGAAAAGATTTGAGAATCTGTTCGCCCTGTGGCTCAAATTGTTCAGAAGGCTTTTTCTTGTCCAGCCCATGCACTGAGAATTCCGATAGGGTATGCACTGCTTGTTCTCTTTGCCAAAATAGCTCCTGCTGGGATGTTTGTCGACTTGAGTCGTCTCCAGATGCTGTTCATAAGAAGAGCTGGCACCATTTGCGTCGATTATTAATCATAATTGGGTCAGCTACTTTGGGATTCTTGTTTATCATGACTTGTGGGTGTATTCTTCCATATTTGATCACTAAGAAAGAATCCAAATCTGGCACGGCCAAAGCAGAGCAACCGGTTGATCCTAATGTTGATCTTCACTCTTTTCCTTCTACAACTTCCTGTCCCGGGATGCCTCAGATTTTCCGACTCTCAGAGCTAAAGGATGCCACTAATGGGTTCAAGGAATTCAACGAGCTTGGCCGAGGAAGTTATGGCTTTGTATACAAAGCTGTATTAGCGGACGGCAGGGTGGTTGCAGTGAAGAGGGCCAATGCTGCCACAATCATCCACACCAACAATCGTGACTTTGAAATGGAACTGGAAATCCTCTGCAAAATCCGTCACTGTAATATCGTGAACTTGTTGGGCTACTGTGCAGAGATGGGGGAGAGGCTTCTTGTGTACGAGTATATGCCGCATAGCACACTTTATGATCACCTTCATGGTGGGCTTTCTCTACTGAGTTGGAGCCTCAGGCTAAAAATATCCATGCAAACTGCAAAAGGTCTTGAGTATCTGCAAAAGGAACTTGCGCCACCAATTGTGCATAAGGATCTCAAGAGTTCCAACATTCTCTTGGACTCCGAATGGGGAGCGAGAATTTCAGACTTTGGGCTCCTCACTTCCGGTGACAAAGATCAAATTGCGGATGTGCAGAACGATGTTTACAACTTTGGCATTGTATTGCTTGAGATTCTGAGTGGAAGAAAAGCTTATGATGGAGATTTTATGCCTCCAAACATAGCTGAGTGGGCAGTGCCTCTGATCAAACGGGGGAAAGCTGCGGCTATAATCGATCGCTCTGTGCCTCTTCCGAGGATCGTTGAGCCATTGCTGAAGCTGGCTGACATTGCAGAGCTGGCTGTGAGACACAATCCCAGCGAGCGTCCGCCTATGTCAGATATAGCATCTTGGTTGGAGCAGATTGTGAAGGACGGACTGATTTTATAG 2304 0.4674 MQVLCAHSFRGLSSSVFLQLLLFLCSSCAYGFGTMGPISASFGKYEFFCAIDASGKQDVICWGKNNTSSAPPSSSSSASVTDSSPMAALSGGEGFMCGILANTSQAYCWSATKPAIDLVPPAYQSYAYWQIAAGKSHVCAIRGSYYSNEDFGIVDCWEIVRTADDSLKWKQSDLYYDQSTSNLALNKVVAGEGFSCGAVRDGGLVCWGPTSASLGVSNVSENFSVLVSGRSSICGLLNVSGDLKCWGDADSFADPPDGARLISLSAGARHYCGIRADNHRVECWGSFNSSVVPKGSGFMAIASSDYSTCGVREEDLLIDCWMVNASTAEFDPPLELSSPGLCSSSSCSQGEFAFNVSILNEPGLTSLCVRKDLRICSPCGSNCSEGFFLSSPCTENSDRVCTACSLCQNSSCWDVCRLESSPDAVHKKSWHHLRRLLIIIGSATLGFLFIMTCGCILPYLITKKESKSGTAKAEQPVDPNVDLHSFPSTTSCPGMPQIFRLSELKDATNGFKEFNELGRGSYGFVYKAVLADGRVVAVKRANAATIIHTNNRDFEMELEILCKIRHCNIVNLLGYCAEMGERLLVYEYMPHSTLYDHLHGGLSLLSWSLRLKISMQTAKGLEYLQKELAPPIVHKDLKSSNILLDSEWGARISDFGLLTSGDKDQIADVQNDVYNFGIVLLEILSGRKAYDGDFMPPNIAEWAVPLIKRGKAAAIIDRSVPLPRIVEPLLKLADIAELAVRHNPSERPPMSDIASWLEQIVKDGLIL 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5356g00053 767 ProSiteProfiles TNFR/NGFR family cysteine-rich region domain profile. 346 401 IPR001368 GO:0005515
Pral5356g00053 767 Pfam Protein tyrosine and serine/threonine kinase 515 664 IPR001245 GO:0004672|GO:0006468
Pral5356g00053 767 ProSitePatterns Serine/Threonine protein kinases active-site signature. 632 644 IPR008271 GO:0004672|GO:0006468
Pral5356g00053 767 ProSitePatterns Protein kinases ATP-binding region signature. 517 539 IPR017441 GO:0005524
Pral5356g00053 767 Gene3D - 216 326 IPR009091 -
Pral5356g00053 767 Gene3D - 31 182 IPR009091 -
Pral5356g00053 767 FunFam Serine/threonine-protein kinase-like protein CCR1 666 764 - -
Pral5356g00053 767 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN ACR4 15 761 - -
Pral5356g00053 767 Gene3D Phosphorylase Kinase; domain 1 483 588 - -
Pral5356g00053 767 Gene3D Transferase(Phosphotransferase) domain 1 665 764 - -
Pral5356g00053 767 ProSiteProfiles Protein kinase domain profile. 511 757 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5356g00053 767 FunFam serine/threonine-protein kinase-like protein CCR1 480 588 - -
Pral5356g00053 767 SMART serkin_6 511 757 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5356g00053 767 Gene3D Transferase(Phosphotransferase) domain 1 589 664 - -
Pral5356g00053 767 SUPERFAMILY RCC1/BLIP-II 38 289 IPR009091 -
Pral5356g00053 767 SUPERFAMILY Protein kinase-like (PK-like) 485 758 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5356g00053 Pral-Chr5356 184464 187265 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5356g00053 16 759 Receptor kinase-like Gene Family AT3G59420 31.127 4.11e-111 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Pral5356g00053 PK_Tyr_Ser-Thr 8.1e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5356g00053 - - gmx:100802259 1079.32