Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5356g00050 ATGGGTAACATAGGAAGTAGTGGCGGTAACAACAACCGCCGTAGGCACAGCGCAAGTGGCAGAAGGAGTCACCCGCCTCCCCCTCCTCCGGTGACCCCACAGCCGGAAATCACGGCCAATCGATTCATCTATCCCGCTGCTCCGCCCTACCCATCACAATACCCAAACTCGAATCCCCCGCCGTATTTCCAGTACCCAGGTTACTATCCCCCAGCGCCAACGACTATGCTGCATCCTCAGCCACCTCCTCATGATCACCATCATCGTATGGGTCCTCATCTACCTGTGGACCCGGCATGGATGGGCGGACGTTACCCTTGTGGCCCTCCGATGCCTGCCTATGTGGAGCATCAGAAGGCGGTTACGATAAGGAACGCTGTTAATGTCAAAAAGGAGACCCTGAGGATTGAGCCCGATGAGGAAAGGCCAGGGCAGTTCCTCGTGGCATTCACATTTGATGCCACTGTGGCTGGGAGCATCACGATACTTTTCTTTGCAAAAGAAGGTGATGGCTGCATTCTTATGCCAACAAAGGAAAACCTTCTAGCACCTGTAACTGTGCACTTTGAGCAAGGTCTTGGCCAGGAGTTTAGACAGCCAGCTGGAACTGGTATTGACTTTTCAATGTTTGAAGAATCTGAGCTATTAAGAAGTGACATGAATGTCTACCCTCTAGCAGTGAAGGCAGATGCCTGCTCTGGTAATCATGAAGGATCAAATGAAACTCTCACACCTGGTGGCACTGACTCTCAGATTACTCAAGCAGTCTTTGAGAAAGAGAAAGGAGAATTCCGGGTGAGGGTAGTTAAACAGATCTTGTGGGTGAATCGAGAGAGATATGAGTTGCAGGAGATATATGGTATTGGAAACTCAGTGGAGAATGACTTGGATGGAAATGACCCAGGAAAAGAGTGTGTCATCTGCTTATCGGAACCTCGGGATACAACTGTTCTTCCCTGTCGGCACATGTGCATGTGTAGCGGATGTGCAAAGGTTCTGAGGTTCCAGACACACAGGTGCCCAATTTGCAGGCAGCCAGTTGAGAGGCTTTTGGAGATAAAAGTCAACAACGGGCGTGAAGATACAACAACACAAGTGTCTCAAGATCCCTGTACAGTATAG 1122 0.5 MGNIGSSGGNNNRRRHSASGRRSHPPPPPPVTPQPEITANRFIYPAAPPYPSQYPNSNPPPYFQYPGYYPPAPTTMLHPQPPPHDHHHRMGPHLPVDPAWMGGRYPCGPPMPAYVEHQKAVTIRNAVNVKKETLRIEPDEERPGQFLVAFTFDATVAGSITILFFAKEGDGCILMPTKENLLAPVTVHFEQGLGQEFRQPAGTGIDFSMFEESELLRSDMNVYPLAVKADACSGNHEGSNETLTPGGTDSQITQAVFEKEKGEFRVRVVKQILWVNRERYELQEIYGIGNSVENDLDGNDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTHRCPICRQPVERLLEIKVNNGREDTTTQVSQDPCTV 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5356g00050 373 Pfam Zinc finger, C3HC4 type (RING finger) 303 349 - -
Pral5356g00050 373 CDD mRING-HC-C3HC5_MGRN1-like 303 344 IPR045195 -
Pral5356g00050 373 FunFam probable E3 ubiquitin-protein ligase LOG2 289 354 - -
Pral5356g00050 373 SMART ring_2 305 343 IPR001841 -
Pral5356g00050 373 MobiDBLite consensus disorder prediction 1 39 - -
Pral5356g00050 373 SUPERFAMILY RING/U-box 304 350 - -
Pral5356g00050 373 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 288 354 IPR013083 -
Pral5356g00050 373 PANTHER MAHOGUNIN 1 365 IPR045194 GO:0061630
Pral5356g00050 373 ProSiteProfiles Zinc finger RING-type profile. 305 344 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5356g00050 Pral-Chr5356 171553 174726 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5356g00050 103 324 C3H Transcription Factor Family AT3G09770 62.500 4.69e-95 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5356g00050 - - jre:108989075 498.049