Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5356g00047 ATGCTTAATCTTCTGGGTTTATCACCCGCCATGGATGCCGTAGGGTGGAGAGGACTGCTCTACGCAATCTCCATTCTTAATTTTGTTTTGGTCTGCCAGCTCGTTCTCCTTCAACCTCTGGTCTCCTCTTCGGAGGGAAAATCTGGAAATGCTGCTGAGTTATTTGAGAGGGTGTCACACAGTATAAAAGTGAAGCGTTATACGGAGGCGCTTGATGATTTAAATGCTGCCATTGAAGCAGATCCCACCCTTTCAGAAGCATACCTACGCCGGGCATCACTTCTTCGCCAGATATGCAGATACAAGGAATCTGAGGGGAGCTACAGAAAGTTTTTGGAGATGAAACCTGGAAATTCAGCAGCAGAAAAGGAACTCTCTCAGTTGTTGCAGGCCCAAAGTGCTCTAGAAACGGCTCAATCATTCTTTGATTCGGGCAACTTCTCAAAATCCTTGGAATACATCAATAAAATAGTGCTTGTTTTTTCTCCTGAATGCTCAAAGGCTAAGCTTCTAAAAGTAAAGCTGTTGATTGCTGATAAAGACTATGAAGAGGCCATTGCGGAGTCTGGATTCATTCTTAAGGAAGATGAGAATAATTTAGAGGCATTGTTGCTTCGAGGGCGTGCATACTATTATTTGGCTGATCATGATGTTGCCGTGAGGCATTACCAGAAAGGTCTCCGCCTAGATCCTGAGCATAGTGAACTGAAAAAAGCATATTTCGGATTGAAAAATCTACTGAAAAAGAGTAAAAGTGCTGAAGATAATGTCAGTAAGGGTAAACTGCGGGTGGCCGTGGAGGAATTCAAAACTGCACTGGCAGTTGATCCTAAGCATCTTGCACATAATGTACATCTGCATCTTGGCTTGTGTAAAGTTTTGGTTAGACTTGGTAGGGGAAAAGATGCTTTGAACAGTTGTGATGAAGTTCTTAAGATCAATGAAGATCTCGTTGAAGCTCTTGTTCAGAGGGGAGAAGCTAAACTTCTAACAGAGGATTGGGAGGGAGCTGTTCAAGATCTGAAATCAGCCACTCAAAAATCTCCTCAGGATATGAATATTCGTGAAGCTTTGATGAGGGCTGAAAAAGCTTTAAAGATAAGCAAGCGCAAAGATTACTACAAGATTCTGGGGATTTCAAAAACGTCTTCTATGTCTGAGATAAAACGTGCCTACAAGAAACTTGCTTTGCAGTGGCACCCTGATAAGAACGTGGACAACAGGGAAGAAGCAGAGGCTAAATTCCGAGAAATTGCTGCTGCATATGAGGTTCTGAGTGACGAAGATAAACGAACCAGATATGACAGAGGGGAAGACCTTGAAGACATGGGAATGGGTGGGGGAGGCGGAGGTTTCAACCCCTTTGGTGGCGGGGGCCAGCAGTTTACCTTTACTTTTGAGGGAGGCTTCCCTGGTGGATTTGGGGGCTTTCCTGGCGGCGGCGGCGGCGGCTTTGAGTTTCATTTTTGA 1470 0.4449 MLNLLGLSPAMDAVGWRGLLYAISILNFVLVCQLVLLQPLVSSSEGKSGNAAELFERVSHSIKVKRYTEALDDLNAAIEADPTLSEAYLRRASLLRQICRYKESEGSYRKFLEMKPGNSAAEKELSQLLQAQSALETAQSFFDSGNFSKSLEYINKIVLVFSPECSKAKLLKVKLLIADKDYEEAIAESGFILKEDENNLEALLLRGRAYYYLADHDVAVRHYQKGLRLDPEHSELKKAYFGLKNLLKKSKSAEDNVSKGKLRVAVEEFKTALAVDPKHLAHNVHLHLGLCKVLVRLGRGKDALNSCDEVLKINEDLVEALVQRGEAKLLTEDWEGAVQDLKSATQKSPQDMNIREALMRAEKALKISKRKDYYKILGISKTSSMSEIKRAYKKLALQWHPDKNVDNREEAEAKFREIAAAYEVLSDEDKRTRYDRGEDLEDMGMGGGGGGFNPFGGGGQQFTFTFEGGFPGGFGGFPGGGGGGFEFHF 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5356g00047 489 SMART dnaj_3 371 430 IPR001623 -
Pral5356g00047 489 SUPERFAMILY Chaperone J-domain 366 476 IPR036869 -
Pral5356g00047 489 Pfam DnaJ domain 372 435 IPR001623 -
Pral5356g00047 489 ProSiteProfiles TPR repeat profile. 85 118 IPR019734 GO:0005515
Pral5356g00047 489 ProSiteProfiles TPR repeat profile. 200 233 IPR019734 GO:0005515
Pral5356g00047 489 FunFam DnaJ subfamily C member 7 370 483 - -
Pral5356g00047 489 Pfam Tetratricopeptide repeat 260 323 - -
Pral5356g00047 489 ProSitePatterns Nt-dnaJ domain signature. 415 434 IPR018253 -
Pral5356g00047 489 FunFam DnaJ domain containing protein 38 369 - -
Pral5356g00047 489 PANTHER DNAJ PROTEIN P58IPK HOMOLOG 23 489 IPR044620 -
Pral5356g00047 489 Gene3D Tetratricopeptide repeat domain 43 369 IPR011990 GO:0005515
Pral5356g00047 489 Pfam Tetratricopeptide repeat 64 119 - -
Pral5356g00047 489 SMART tpr_5 318 351 IPR019734 GO:0005515
Pral5356g00047 489 SMART tpr_5 51 84 IPR019734 GO:0005515
Pral5356g00047 489 SMART tpr_5 85 118 IPR019734 GO:0005515
Pral5356g00047 489 SMART tpr_5 200 233 IPR019734 GO:0005515
Pral5356g00047 489 SMART tpr_5 284 317 IPR019734 GO:0005515
Pral5356g00047 489 Gene3D DnaJ domain 370 478 IPR036869 -
Pral5356g00047 489 CDD DnaJ 372 427 IPR001623 -
Pral5356g00047 489 SUPERFAMILY TPR-like 63 367 IPR011990 GO:0005515
Pral5356g00047 489 Coils Coil 118 138 - -
Pral5356g00047 489 PRINTS DnaJ domain signature 374 392 IPR001623 -
Pral5356g00047 489 PRINTS DnaJ domain signature 430 449 IPR001623 -
Pral5356g00047 489 PRINTS DnaJ domain signature 410 430 IPR001623 -
Pral5356g00047 489 PRINTS DnaJ domain signature 392 407 IPR001623 -
Pral5356g00047 489 ProSiteProfiles dnaJ domain profile. 372 438 IPR001623 -
Pral5356g00047 489 Pfam Tetratricopeptide repeat 201 233 IPR013105 -
Pral5356g00047 489 Coils Coil 408 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5356g00047 Pral-Chr5356 149973 155088 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5356g00047 368 435 C2H2 Transcription Factor Family AT1G74250 48.611 1.73e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5356g00047 K09523 - gmx:100804685 696.812