Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5356g00045 ATGATGTCTGGCGACCCTTTCTCCTTATCCACTTCCATCGGAGGTTTTGCTCCACAACAAAACCCGAACCCAAACCCTAACCCTAAACCTAATCCCAAGAAGAAAAGGAATCTCCCGGGAACACCAGATCCAGATGCGGAGGTCATCGCGCTCTCACCGAAAACTCTCATGGCCACCAACAGGTTCATTTGCGAAATATGCAACAAAGGGTTTCAGAGAGATCAGAACCTTCAGCTTCACCGGAGGGGTCACAACTTGCCATGGAAGTTACGACAAAGGTCCAATAAAGAAGTTCGAAAGAAGGTCTACATCTGCCCGGAGAAGACGTGCGTCCACCATGACCCATCCAGAGCTCTGGGCGACCTCACGGGCATAAAGAAGCATTTTAGCAGAAAACATGGAGAGAAGAAATGGAAGTGTGACAAGTGTTCCAAGAAATACGCGGTCCAATCTGACTGGAAAGCTCACACCAAGACTTGTGGAACAAGAGAATACAAGTGCGATTGTGGGAACCTATTCTCCAGAAAGGACAGCTTCATTACACACAGAGCTTTCTGCGACGCCTTAGCAGAAGAGAGTGCGAGACTCACCTCGGTTGCCACAACAAACCTGAATTTCAAGAACGAAGGGAATGCGATGAGCTCACAACCTAGCCTGGGACTTGAAAACAACGCAGAGGTAATCTCTCAATTTGGCTCGCATGGATTTCGTGCAGATTTTAATGGAGGAATGGGTACGGACCAGCAAAGAGCAAGCTTATCAATGTGGTTGAACCAGGGAAATAATAACGGCCTTGACGTTGGAGGGCTGTACGGGTCTTCAAGTTGTTCTTCAGGTTTGGGTGACCGTATGGCACAAATGACTACCCAAGCTAATAACAATGCTTTTGGGTCTTGCAATTTCGGAATGCCTTCTTCAAATTCAACAAACGCAGGTCTTTTACTATCAAGTGGGAAAAGGAGCGAAGCTATGTCAAAGCCAGCTTCTCCCATGTCAGCGACTGCTTTACTTCAGAAAGCAGCTCAGATGGGTTCCACCAGAAGCAGCAGCAACAACAACAACAATCCCTCTATTTTCAGTGGCACTTTGGGAGTGATGTCCTCGTCTTCTAATTCCCACGCGACCACTAATCTCAACGATAACAACAACACCAACAACCCCCAGAACTTTAGTTCAACTAGCAGTGCTGAGCCAGTGCTAGCAGATAACAACTTTAGCTCGTTCACACATGCATCGAACAGTACTAATCTTGACCAGCTCTTGATGCAGACCAGTGCAAAGCAAAGTGAACAACAAGTGCAATTGAAGCTTTACCCAGGTGTTTCATCCGAACACAATTTAACGAGAGATTTTCTCGGCATGGGTGGTGGCGGTGGTGCCGGAGGAGCTGGGCCTCCTCCCCCGTTTTTACCACAAGAGCTGGCAAAGTTTGCGTCCATTGGTTCCCCCATGGGTTTAACCCAATTTACTGCCAACCATTGA 1482 0.4764 MMSGDPFSLSTSIGGFAPQQNPNPNPNPKPNPKKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVRKKVYICPEKTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHTKTCGTREYKCDCGNLFSRKDSFITHRAFCDALAEESARLTSVATTNLNFKNEGNAMSSQPSLGLENNAEVISQFGSHGFRADFNGGMGTDQQRASLSMWLNQGNNNGLDVGGLYGSSSCSSGLGDRMAQMTTQANNNAFGSCNFGMPSSNSTNAGLLLSSGKRSEAMSKPASPMSATALLQKAAQMGSTRSSSNNNNNPSIFSGTLGVMSSSSNSHATTNLNDNNNTNNPQNFSSTSSAEPVLADNNFSSFTHASNSTNLDQLLMQTSAKQSEQQVQLKLYPGVSSEHNLTRDFLGMGGGGGAGGAGPPPPFLPQELAKFASIGSPMGLTQFTANH 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5356g00045 493 FunFam protein indeterminate-domain 5, chloroplastic-like 116 195 - -
Pral5356g00045 493 MobiDBLite consensus disorder prediction 1 47 - -
Pral5356g00045 493 MobiDBLite consensus disorder prediction 1 20 - -
Pral5356g00045 493 MobiDBLite consensus disorder prediction 21 35 - -
Pral5356g00045 493 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 21 462 IPR031140 -
Pral5356g00045 493 MobiDBLite consensus disorder prediction 317 398 - -
Pral5356g00045 493 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
Pral5356g00045 493 FunFam protein indeterminate-domain 12-like 41 109 - -
Pral5356g00045 493 Pfam Zinc-finger double-stranded RNA-binding 62 84 IPR022755 -
Pral5356g00045 493 Gene3D Classic Zinc Finger 116 195 - -
Pral5356g00045 493 Gene3D Classic Zinc Finger 40 114 - -
Pral5356g00045 493 SUPERFAMILY beta-beta-alpha zinc fingers 61 158 IPR036236 -
Pral5356g00045 493 SMART c2h2final6 138 158 IPR013087 -
Pral5356g00045 493 SMART c2h2final6 103 133 IPR013087 -
Pral5356g00045 493 SMART c2h2final6 62 84 IPR013087 -
Pral5356g00045 493 MobiDBLite consensus disorder prediction 327 398 - -
Pral5356g00045 493 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 84 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5356g00045 Pral-Chr5356 145116 147695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5356g00045 1 481 IDZ Gene Family AT5G03150 46.250 9.02e-133 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral5356g00045 zf-C2H2_jaz 7.2e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5356g00045 K25870 - gmx:100801182 552.747