Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5356g00043 ATGAGTCATAGGCATTTGTATAGCACATCTCAAGTGTTTGAGAGTGATCATGACCAAAATTGGAATTCTATACATACTGATCAACAGTATGTGCACCTTGGTAGAGCTAGCACTACAGAGAATGGCTCTTTTGTTTATCCTGTAGAAAATATGCCTATAGATGGCATTTCTTTTGCCTCTAATTGGAATTCTACCACAATGCCAAATGGATTTGCATCCTCAAGTCTCAATATGGAAGTACCACCTCATCAATCTGATGCATCGGGCACTACCCATGATCATTTTCTGCATTCATCAAGTGCTGCGGGCTTCTTTGCAGTTTCTGAAAATTATGCGCATCAGCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTTCTTCCAATTATGATAGACAGCCATTTCATGTTGTTGATGGTGGTTTTATTGATCTTACAATGGGAAATGGAAGAGGACCGCACAAGCGGAAGAGCCCTGGAATTCCTCCGGTCTGTGAGAGAGGTAGTACAAGCAGATACGTAAGCGCTGGAAGTTCAACTGATCTTCCAATGTCTTCAGAACTACGGCAGGAGAAGCCAAATATGGATTCTCAATATTTGCCTCGGGATCAAGTTACCATGCCACTCACCTTTAGAGGCAGTGGCCTTTCAATCAGGGGTGAGGGTTCCTTGAGAAATGTGAGAAGCCGTCCTGCACTTGATTTTGAATCCAACCCGGCTAGGACCCATTTATCTGGCAACCATTCACACAGCTACTCCACTGGTCTACCCATTGACCATTCTAGCACAATGGATCTCTCTGGTCAGAGTTCTAGTACATTAGCAAGGAATTGGAGCCAAATGAGCACGTCTCATGCTCATGGCAGGGTGCTGTTACCAGATACAAGTGCTTGTGAGACAAGTCACTTCCTTGTTGGAAGTGGCGCCAGTAATGCCTCTGTAGATGTTGGGGGTTACCATCATGAGTTTGGTACAAGCAGAAATCCTATTGTGCCTCAAAGTCTTCATAATAATCTGACTCAGACTGCTAGGGGAGTGCGAAGCAACTTTTCACAGAGGTCTGCTCCGCCTTTTAGATCATCTTCAAGCTTGCGCTTGGGACATGTGGCAACATCAGATGATGGATTGCAAGTGGTTGCCGATAGTTACTCCTCAAGACATCCAAGGCCATTAGCAACGACTGGCTGGCGGAACACTGACAGAAATGGAAGGTCAAGGATATCTAGTGATAGGTATCGCCAAGTGGCTGATGCACCTGGTCTCCATGATCGATTTTCTTCGGAGGGTTTCATGATTGTTGATCGTGGGTTGCCATATGGTTCTAGAAGTATGGTTGATCAGCATAGGGACATGAGGATGGACATAGACGACATGAGCTACGAGGAACTACTTGCCCTTGGAGAGAGGATTGGTCATGTCAACACAGGTTTGTCCGAGGATTTGATTTCAAAATGCATGACGGAGACAATATATTGTTCATCTGAGCAGAGTCAGGAGGAAGGAACTTGTGTAATCTGTTTGGAAGAATACAAGAACATGGATGATGTTGGGACGCTGAAAACTTGCCGTCACGACTACCATGTGAGCTGCATTAGAAAGTGGTTATCTATGAAGAATAAATGTCCAATCTGCAAAGCTTCTGCTCTGCCAGATGATATGAAGGATAAATAA 1665 0.4486 MSHRHLYSTSQVFESDHDQNWNSIHTDQQYVHLGRASTTENGSFVYPVENMPIDGISFASNWNSTTMPNGFASSSLNMEVPPHQSDASGTTHDHFLHSSSAAGFFAVSENYAHQPPPPPPPPPSSSNYDRQPFHVVDGGFIDLTMGNGRGPHKRKSPGIPPVCERGSTSRYVSAGSSTDLPMSSELRQEKPNMDSQYLPRDQVTMPLTFRGSGLSIRGEGSLRNVRSRPALDFESNPARTHLSGNHSHSYSTGLPIDHSSTMDLSGQSSSTLARNWSQMSTSHAHGRVLLPDTSACETSHFLVGSGASNASVDVGGYHHEFGTSRNPIVPQSLHNNLTQTARGVRSNFSQRSAPPFRSSSSLRLGHVATSDDGLQVVADSYSSRHPRPLATTGWRNTDRNGRSRISSDRYRQVADAPGLHDRFSSEGFMIVDRGLPYGSRSMVDQHRDMRMDIDDMSYEELLALGERIGHVNTGLSEDLISKCMTETIYCSSEQSQEEGTCVICLEEYKNMDDVGTLKTCRHDYHVSCIRKWLSMKNKCPICKASALPDDMKDK 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5356g00043 554 SMART ring_2 501 542 IPR001841 -
Pral5356g00043 554 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 109 547 IPR045191 GO:0061630
Pral5356g00043 554 MobiDBLite consensus disorder prediction 385 400 - -
Pral5356g00043 554 MobiDBLite consensus disorder prediction 382 405 - -
Pral5356g00043 554 MobiDBLite consensus disorder prediction 110 195 - -
Pral5356g00043 554 SUPERFAMILY RING/U-box 490 548 - -
Pral5356g00043 554 MobiDBLite consensus disorder prediction 112 127 - -
Pral5356g00043 554 MobiDBLite consensus disorder prediction 234 256 - -
Pral5356g00043 554 MobiDBLite consensus disorder prediction 169 195 - -
Pral5356g00043 554 Pfam Ring finger domain 500 543 IPR001841 -
Pral5356g00043 554 FunFam E3 ubiquitin-protein ligase MBR2 isoform A 466 547 - -
Pral5356g00043 554 CDD RING-H2_RNF24-like 499 546 - -
Pral5356g00043 554 MobiDBLite consensus disorder prediction 238 256 - -
Pral5356g00043 554 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 466 547 IPR013083 -
Pral5356g00043 554 MobiDBLite consensus disorder prediction 344 364 - -
Pral5356g00043 554 ProSiteProfiles Zinc finger RING-type profile. 501 543 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5356g00043 Pral-Chr5356 120410 124271 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5356g00043 1 553 C3H Transcription Factor Family AT2G37150 40.351 7.15e-107 329
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5356g00043 - - gmx:100803627 839.336