Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5356g00039 ATGAAGGATTGTCAGCTATTTGCCGGTCTGTCTTTAACTACGGTTTCTATCCTGATATTGCAAGTGACAGCTATGAGTCATAGGCATTTGTATAGCACATCTCAAGTGTTTGAGAGTGATCATGACCAAAATTGGAATTCTATACATACTGATCAACAGTATGTGCACCTTGGTAGAGCTAGCACTACAGAGAATGGCTCTTTTGTTTATCCTGTAGAAAATATGCCTATAGATGGCATTTCTTTTGCCTCTAATTGGAATTCTACCACAATGCCAAATGGATTTGCATCCTCAAGTCTCAATATGGAAGTACCACCTCATCAATCTGATGCATCGGGCACTACCCATGATCATTTTCTGCATTCATCAAGTGCTGCGGGCTTCTTTGCAGTTTCTGAAAATTATGCGCATCAGCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTTCTTCCAATTATGATAGACAGCCATTTCATGTTGTTGATGGTGGTTTTATTGATCTTACAATGGGAAATGGAAGAGGACCGCACAAGCGGAAGAGCCCTGGAATTCCTCCGGTCTGTGAGAGAGGTAGTACAAGCAGATACGTAAGCGCTGGAAGTTCAACTGATCTTCCAATGTCTTCAGAACTACGGCAGGAGAAGCCAAATATGGATTCTCAATATTTGCCTCGGGATCAAGTTACCATGCCACTCACCTTTAGAGGCAGTGGCCTTTCAATCAGGGGTGAGGGTTCCTTGAGAAATGTGAGAAGCCGTCCTGCACTTGATTTTGAATCCAACCCGGCTAGGACCCATTTATCTGGCAACCATTCACACAGCTACTCCACTGGTCTACCCATTGACCATTCTAGCACAATGGATCTCTCTGGTCAGAGTTCTAGTACATTAGCAAGGAATTGGAGCCAAATGAGCACGTCTCATGCTCATGGCAGGGTGCTGTTACCAGATACAAGTGCTTGTGAGACAAGTCACTTCCTTGTTGGAAGTGGCGCCAGTAATGCCTCTGTAGATGTTGGGGGTTACCATCATGAGTTTGGTACAAGCAGAAATCCTATTGTGCCTCAAAGTCTTCATAATAATCTGACTCAGACTGCTAGGGGAGTGCGAAGCAACTTTTCACAGAGGTCTGCTCCGCCTTTTAGATCATCTTCAAGCTTGCGCTTGGGACATGTGGCAACATCAGATGATGGATTGCAAGTGGTTGCCGATAGTTACTCCTCAAGACATCCAAGGCCATTAGCAACGACTGGCTGGCGGAACACTGACAGAAATGGAAGGTCAAGGATATCTAGTGATAGGTATCGCCAAGTGGCTGATGCACCTGGTCTCCATGATCGATTTTCTTCGGAGGGTTTCATGATTGTTGATCGTGGGTTGCCATATGGTTCTAGAAGTATGGTTGATCAGCATAGGGACATGAGGATGGACATAGACGACATGAGCTACGAGGAACTACTTGCCCTTGGAGAGAGGATTGGTCATGTCAACACAGGTTTGTCCGAGGATTTGATTTCAAAATGCATGACGGAGACAATATATTGTTCATCTGAGCAGAGTCAGGAGGAAGGAACTTGTGTAATCTGTTTGGAAGAATACAAGAACATGGATGATGTTGGGACGCTGAAAACTTGCCGTCACGACTACCATGTGAGCTGCATTAGAAAGTGGTTATCTATGAAGAATAAATGTCCAATCTGCAAAGCTTCTGCTCTGCCAGATGATATGAAGGATAAATAA 1737 0.4473 MKDCQLFAGLSLTTVSILILQVTAMSHRHLYSTSQVFESDHDQNWNSIHTDQQYVHLGRASTTENGSFVYPVENMPIDGISFASNWNSTTMPNGFASSSLNMEVPPHQSDASGTTHDHFLHSSSAAGFFAVSENYAHQPPPPPPPPPSSSNYDRQPFHVVDGGFIDLTMGNGRGPHKRKSPGIPPVCERGSTSRYVSAGSSTDLPMSSELRQEKPNMDSQYLPRDQVTMPLTFRGSGLSIRGEGSLRNVRSRPALDFESNPARTHLSGNHSHSYSTGLPIDHSSTMDLSGQSSSTLARNWSQMSTSHAHGRVLLPDTSACETSHFLVGSGASNASVDVGGYHHEFGTSRNPIVPQSLHNNLTQTARGVRSNFSQRSAPPFRSSSSLRLGHVATSDDGLQVVADSYSSRHPRPLATTGWRNTDRNGRSRISSDRYRQVADAPGLHDRFSSEGFMIVDRGLPYGSRSMVDQHRDMRMDIDDMSYEELLALGERIGHVNTGLSEDLISKCMTETIYCSSEQSQEEGTCVICLEEYKNMDDVGTLKTCRHDYHVSCIRKWLSMKNKCPICKASALPDDMKDK 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5356g00039 578 MobiDBLite consensus disorder prediction 406 429 - -
Pral5356g00039 578 MobiDBLite consensus disorder prediction 409 424 - -
Pral5356g00039 578 FunFam E3 ubiquitin-protein ligase MBR2 isoform A 490 571 - -
Pral5356g00039 578 SMART ring_2 525 566 IPR001841 -
Pral5356g00039 578 MobiDBLite consensus disorder prediction 136 151 - -
Pral5356g00039 578 MobiDBLite consensus disorder prediction 134 219 - -
Pral5356g00039 578 SUPERFAMILY RING/U-box 514 572 - -
Pral5356g00039 578 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 173 571 IPR045191 GO:0061630
Pral5356g00039 578 Pfam Ring finger domain 524 567 IPR001841 -
Pral5356g00039 578 MobiDBLite consensus disorder prediction 193 219 - -
Pral5356g00039 578 ProSiteProfiles Zinc finger RING-type profile. 525 567 IPR001841 -
Pral5356g00039 578 MobiDBLite consensus disorder prediction 258 280 - -
Pral5356g00039 578 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 490 571 IPR013083 -
Pral5356g00039 578 MobiDBLite consensus disorder prediction 368 388 - -
Pral5356g00039 578 CDD RING-H2_RNF24-like 523 570 - -
Pral5356g00039 578 MobiDBLite consensus disorder prediction 262 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5356g00039 Pral-Chr5356 120410 125743 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5356g00039 25 577 C3H Transcription Factor Family AT2G37150 40.351 5.01e-107 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5356g00039 - - gmx:100803627 839.336