Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5356g00038 ATGTCGCTGAGTCAGAGTGCAAAATGCTTTCCTCTTTCAATTGAAAGTGATTGTCAGCTATTTGCCGGTCTGTCTTTAACTACGGTTTCTATCCTGATATTGCAAGTGACAGCTATGAGTCATAGGCATTTGTATAGCACATCTCAAGTGTTTGAGAGTGATCATGACCAAAATTGGAATTCTATACATACTGATCAACAGTATGTGCACCTTGGTAGAGCTAGCACTACAGAGAATGGCTCTTTTGTTTATCCTGTAGAAAATATGCCTATAGATGGCATTTCTTTTGCCTCTAATTGGAATTCTACCACAATGCCAAATGGATTTGCATCCTCAAGTCTCAATATGGAAGTACCACCTCATCAATCTGATGCATCGGGCACTACCCATGATCATTTTCTGCATTCATCAAGTGCTGCGGGCTTCTTTGCAGTTTCTGAAAATTATGCGCATCAGCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTTCTTCCAATTATGATAGACAGCCATTTCATGTTGTTGATGGTGGTTTTATTGATCTTACAATGGGAAATGGAAGAGGACCGCACAAGCGGAAGAGCCCTGGAATTCCTCCGGTCTGTGAGAGAGGTAGTACAAGCAGATACGTAAGCGCTGGAAGTTCAACTGATCTTCCAATGTCTTCAGAACTACGGCAGGAGAAGCCAAATATGGATTCTCAATATTTGCCTCGGGATCAAGTTACCATGCCACTCACCTTTAGAGGCAGTGGCCTTTCAATCAGGGGTGAGGGTTCCTTGAGAAATGTGAGAAGCCGTCCTGCACTTGATTTTGAATCCAACCCGGCTAGGACCCATTTATCTGGCAACCATTCACACAGCTACTCCACTGGTCTACCCATTGACCATTCTAGCACAATGGATCTCTCTGGTCAGAGTTCTAGTACATTAGCAAGGAATTGGAGCCAAATGAGCACGTCTCATGCTCATGGCAGGGTGCTGTTACCAGATACAAGTGCTTGTGAGACAAGTCACTTCCTTGTTGGAAGTGGCGCCAGTAATGCCTCTGTAGATGTTGGGGGTTACCATCATGAGTTTGGTACAAGCAGAAATCCTATTGTGCCTCAAAGTCTTCATAATAATCTGACTCAGACTGCTAGGGGAGTGCGAAGCAACTTTTCACAGAGGTCTGCTCCGCCTTTTAGATCATCTTCAAGCTTGCGCTTGGGACATGTGGCAACATCAGATGATGGATTGCAAGTGGTTGCCGATAGTTACTCCTCAAGACATCCAAGGCCATTAGCAACGACTGGCTGGCGGAACACTGACAGAAATGGAAGGTCAAGGATATCTAGTGATAGGTATCGCCAAGTGGCTGATGCACCTGGTCTCCATGATCGATTTTCTTCGGAGGGTTTCATGATTGTTGATCGTGGGTTGCCATATGGTTCTAGAAGTATGGTTGATCAGCATAGGGACATGAGGATGGACATAGACGACATGAGCTACGAGGAACTACTTGCCCTTGGAGAGAGGATTGGTCATGTCAACACAGGTTTGTCCGAGGATTTGATTTCAAAATGCATGACGGAGACAATATATTGTTCATCTGAGCAGAGTCAGGAGGAAGGAACTTGTGTAATCTGTTTGGAAGAATACAAGAACATGGATGATGTTGGGACGCTGAAAACTTGCCGTCACGACTACCATGTGAGCTGCATTAGAAAGTGGTTATCTATGAAGAATAAATGTCCAATCTGCAAAGCTTCTGCTCTGCCAGATGATATGAAGGATAAATAA 1779 0.4463 MSLSQSAKCFPLSIESDCQLFAGLSLTTVSILILQVTAMSHRHLYSTSQVFESDHDQNWNSIHTDQQYVHLGRASTTENGSFVYPVENMPIDGISFASNWNSTTMPNGFASSSLNMEVPPHQSDASGTTHDHFLHSSSAAGFFAVSENYAHQPPPPPPPPPSSSNYDRQPFHVVDGGFIDLTMGNGRGPHKRKSPGIPPVCERGSTSRYVSAGSSTDLPMSSELRQEKPNMDSQYLPRDQVTMPLTFRGSGLSIRGEGSLRNVRSRPALDFESNPARTHLSGNHSHSYSTGLPIDHSSTMDLSGQSSSTLARNWSQMSTSHAHGRVLLPDTSACETSHFLVGSGASNASVDVGGYHHEFGTSRNPIVPQSLHNNLTQTARGVRSNFSQRSAPPFRSSSSLRLGHVATSDDGLQVVADSYSSRHPRPLATTGWRNTDRNGRSRISSDRYRQVADAPGLHDRFSSEGFMIVDRGLPYGSRSMVDQHRDMRMDIDDMSYEELLALGERIGHVNTGLSEDLISKCMTETIYCSSEQSQEEGTCVICLEEYKNMDDVGTLKTCRHDYHVSCIRKWLSMKNKCPICKASALPDDMKDK 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5356g00038 592 SMART ring_2 539 580 IPR001841 -
Pral5356g00038 592 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 187 585 IPR045191 GO:0061630
Pral5356g00038 592 MobiDBLite consensus disorder prediction 420 444 - -
Pral5356g00038 592 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 504 585 IPR013083 -
Pral5356g00038 592 FunFam E3 ubiquitin-protein ligase MBR2 isoform A 504 585 - -
Pral5356g00038 592 MobiDBLite consensus disorder prediction 382 402 - -
Pral5356g00038 592 SUPERFAMILY RING/U-box 528 586 - -
Pral5356g00038 592 CDD RING-H2_RNF24-like 537 584 - -
Pral5356g00038 592 MobiDBLite consensus disorder prediction 276 294 - -
Pral5356g00038 592 MobiDBLite consensus disorder prediction 423 438 - -
Pral5356g00038 592 ProSiteProfiles Zinc finger RING-type profile. 539 581 IPR001841 -
Pral5356g00038 592 MobiDBLite consensus disorder prediction 150 165 - -
Pral5356g00038 592 MobiDBLite consensus disorder prediction 148 233 - -
Pral5356g00038 592 MobiDBLite consensus disorder prediction 207 233 - -
Pral5356g00038 592 MobiDBLite consensus disorder prediction 272 294 - -
Pral5356g00038 592 Pfam Ring finger domain 538 581 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5356g00038 Pral-Chr5356 120410 125791 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5356g00038 39 591 C3H Transcription Factor Family AT2G37150 40.351 6.86e-107 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5356g00038 - - gmx:100803627 839.336