Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5356g00036 ATGGACAATTTAGGGTGGGTGGTGGGATGGGACTCTGCAAACATCATTGCTCTAGTTCTAACTGATGTCCTGAGGTGTGAAATATGGCTGTCGATAAACCTTTATGCTAACTGCCGTATGACATATTGTCAGCTATTTGCCGGTCTGTCTTTAACTACGGTTTCTATCCTGATATTGCAAGTGACAGCTATGAGTCATAGGCATTTGTATAGCACATCTCAAGTGTTTGAGAGTGATCATGACCAAAATTGGAATTCTATACATACTGATCAACAGTATGTGCACCTTGGTAGAGCTAGCACTACAGAGAATGGCTCTTTTGTTTATCCTGTAGAAAATATGCCTATAGATGGCATTTCTTTTGCCTCTAATTGGAATTCTACCACAATGCCAAATGGATTTGCATCCTCAAGTCTCAATATGGAAGTACCACCTCATCAATCTGATGCATCGGGCACTACCCATGATCATTTTCTGCATTCATCAAGTGCTGCGGGCTTCTTTGCAGTTTCTGAAAATTATGCGCATCAGCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTTCTTCCAATTATGATAGACAGCCATTTCATGTTGTTGATGGTGGTTTTATTGATCTTACAATGGGAAATGGAAGAGGACCGCACAAGCGGAAGAGCCCTGGAATTCCTCCGGTCTGTGAGAGAGGTAGTACAAGCAGATACGTAAGCGCTGGAAGTTCAACTGATCTTCCAATGTCTTCAGAACTACGGCAGGAGAAGCCAAATATGGATTCTCAATATTTGCCTCGGGATCAAGTTACCATGCCACTCACCTTTAGAGGCAGTGGCCTTTCAATCAGGGGTGAGGGTTCCTTGAGAAATGTGAGAAGCCGTCCTGCACTTGATTTTGAATCCAACCCGGCTAGGACCCATTTATCTGGCAACCATTCACACAGCTACTCCACTGGTCTACCCATTGACCATTCTAGCACAATGGATCTCTCTGGTCAGAGTTCTAGTACATTAGCAAGGAATTGGAGCCAAATGAGCACGTCTCATGCTCATGGCAGGGTGCTGTTACCAGATACAAGTGCTTGTGAGACAAGTCACTTCCTTGTTGGAAGTGGCGCCAGTAATGCCTCTGTAGATGTTGGGGGTTACCATCATGAGTTTGGTACAAGCAGAAATCCTATTGTGCCTCAAAGTCTTCATAATAATCTGACTCAGACTGCTAGGGGAGTGCGAAGCAACTTTTCACAGAGGTCTGCTCCGCCTTTTAGATCATCTTCAAGCTTGCGCTTGGGACATGTGGCAACATCAGATGATGGATTGCAAGTGGTTGCCGATAGTTACTCCTCAAGACATCCAAGGCCATTAGCAACGACTGGCTGGCGGAACACTGACAGAAATGGAAGGTCAAGGATATCTAGTGATAGGTATCGCCAAGTGGCTGATGCACCTGGTCTCCATGATCGATTTTCTTCGGAGGGTTTCATGATTGTTGATCGTGGGTTGCCATATGGTTCTAGAAGTATGGTTGATCAGCATAGGGACATGAGGATGGACATAGACGACATGAGCTACGAGGAACTACTTGCCCTTGGAGAGAGGATTGGTCATGTCAACACAGGTTTGTCCGAGGATTTGATTTCAAAATGCATGACGGAGACAATATATTGTTCATCTGAGCAGAGTCAGGAGGAAGGAACTTGTGTAATCTGTTTGGAAGAATACAAGAACATGGATGATGTTGGGACGCTGAAAACTTGCCGTCACGACTACCATGTGAGCTGCATTAGAAAGTGGTTATCTATGAAGAATAAATGTCCAATCTGCAAAGCTTCTGCTCTGCCAGATGATATGAAGGATAAATAA 1854 0.4471 MDNLGWVVGWDSANIIALVLTDVLRCEIWLSINLYANCRMTYCQLFAGLSLTTVSILILQVTAMSHRHLYSTSQVFESDHDQNWNSIHTDQQYVHLGRASTTENGSFVYPVENMPIDGISFASNWNSTTMPNGFASSSLNMEVPPHQSDASGTTHDHFLHSSSAAGFFAVSENYAHQPPPPPPPPPSSSNYDRQPFHVVDGGFIDLTMGNGRGPHKRKSPGIPPVCERGSTSRYVSAGSSTDLPMSSELRQEKPNMDSQYLPRDQVTMPLTFRGSGLSIRGEGSLRNVRSRPALDFESNPARTHLSGNHSHSYSTGLPIDHSSTMDLSGQSSSTLARNWSQMSTSHAHGRVLLPDTSACETSHFLVGSGASNASVDVGGYHHEFGTSRNPIVPQSLHNNLTQTARGVRSNFSQRSAPPFRSSSSLRLGHVATSDDGLQVVADSYSSRHPRPLATTGWRNTDRNGRSRISSDRYRQVADAPGLHDRFSSEGFMIVDRGLPYGSRSMVDQHRDMRMDIDDMSYEELLALGERIGHVNTGLSEDLISKCMTETIYCSSEQSQEEGTCVICLEEYKNMDDVGTLKTCRHDYHVSCIRKWLSMKNKCPICKASALPDDMKDK 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5356g00036 617 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 172 610 IPR045191 GO:0061630
Pral5356g00036 617 SUPERFAMILY RING/U-box 553 611 - -
Pral5356g00036 617 FunFam E3 ubiquitin-protein ligase MBR2 isoform A 529 610 - -
Pral5356g00036 617 MobiDBLite consensus disorder prediction 297 319 - -
Pral5356g00036 617 MobiDBLite consensus disorder prediction 173 258 - -
Pral5356g00036 617 MobiDBLite consensus disorder prediction 175 190 - -
Pral5356g00036 617 SMART ring_2 564 605 IPR001841 -
Pral5356g00036 617 MobiDBLite consensus disorder prediction 232 258 - -
Pral5356g00036 617 Pfam Ring finger domain 563 606 IPR001841 -
Pral5356g00036 617 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 529 610 IPR013083 -
Pral5356g00036 617 ProSiteProfiles Zinc finger RING-type profile. 564 606 IPR001841 -
Pral5356g00036 617 MobiDBLite consensus disorder prediction 407 427 - -
Pral5356g00036 617 MobiDBLite consensus disorder prediction 445 468 - -
Pral5356g00036 617 MobiDBLite consensus disorder prediction 448 463 - -
Pral5356g00036 617 CDD RING-H2_RNF24-like 562 609 - -
Pral5356g00036 617 MobiDBLite consensus disorder prediction 301 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5356g00036 Pral-Chr5356 120410 126687 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5356g00036 64 616 C3H Transcription Factor Family AT2G37150 40.351 2.01e-106 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5356g00036 - - gmx:100803627 839.336