Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5356g00034 ATGGAACAGGAAGATTGTCAGCTATTTGCCGGTCTGTCTTTAACTACGGTTTCTATCCTGATATTGCAAGTGACAGCTATGAGTCATAGGCATTTGTATAGCACATCTCAAGTGTTTGAGAGTGATCATGACCAAAATTGGAATTCTATACATACTGATCAACAGTATGTGCACCTTGGTAGAGCTAGCACTACAGAGAATGGCTCTTTTGTTTATCCTGTAGAAAATATGCCTATAGATGGCATTTCTTTTGCCTCTAATTGGAATTCTACCACAATGCCAAATGGATTTGCATCCTCAAGTCTCAATATGGAAGTACCACCTCATCAATCTGATGCATCGGGCACTACCCATGATCATTTTCTGCATTCATCAAGTGCTGCGGGCTTCTTTGCAGTTTCTGAAAATTATGCGCATCAGCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTTCTTCCAATTATGATAGACAGCCATTTCATGTTGTTGATGGTGGTTTTATTGATCTTACAATGGGAAATGGAAGAGGACCGCACAAGCGGAAGAGCCCTGGAATTCCTCCGGTCTGTGAGAGAGGTAGTACAAGCAGATACGTAAGCGCTGGAAGTTCAACTGATCTTCCAATGTCTTCAGAACTACGGCAGGAGAAGCCAAATATGGATTCTCAATATTTGCCTCGGGATCAAGTTACCATGCCACTCACCTTTAGAGGCAGTGGCCTTTCAATCAGGGGTGAGGGTTCCTTGAGAAATGTGAGAAGCCGTCCTGCACTTGATTTTGAATCCAACCCGGCTAGGACCCATTTATCTGGCAACCATTCACACAGCTACTCCACTGGTCTACCCATTGACCATTCTAGCACAATGGATCTCTCTGGTCAGAGTTCTAGTACATTAGCAAGGAATTGGAGCCAAATGAGCACGTCTCATGCTCATGGCAGGGTGCTGTTACCAGATACAAGTGCTTGTGAGACAAGTCACTTCCTTGTTGGAAGTGGCGCCAGTAATGCCTCTGTAGATGTTGGGGGTTACCATCATGAGTTTGGTACAAGCAGAAATCCTATTGTGCCTCAAAGTCTTCATAATAATCTGACTCAGACTGCTAGGGGAGTGCGAAGCAACTTTTCACAGAGGTCTGCTCCGCCTTTTAGATCATCTTCAAGCTTGCGCTTGGGACATGTGGCAACATCAGATGATGGATTGCAAGTGGTTGCCGATAGTTACTCCTCAAGACATCCAAGGCCATTAGCAACGACTGGCTGGCGGAACACTGACAGAAATGGAAGGTCAAGGATATCTAGTGATAGGTATCGCCAAGTGGCTGATGCACCTGGTCTCCATGATCGATTTTCTTCGGAGGGTTTCATGATTGTTGATCGTGGGTTGCCATATGGTTCTAGAAGTATGGTTGATCAGCATAGGGACATGAGGATGGACATAGACGACATGAGCTACGAGGAACTACTTGCCCTTGGAGAGAGGATTGGTCATGTCAACACAGGTTTGTCCGAGGATTTGATTTCAAAATGCATGACGGAGACAATATATTGTTCATCTGAGCAGAGTCAGGAGGAAGGAACTTGTGTAATCTGTTTGGAAGAATACAAGAACATGGATGATGTTGGGACGCTGAAAACTTGCCGTCACGACTACCATGTGAGCTGCATTAGAAAGTGGTTATCTATGAAGAATAAATGTCCAATCTGCAAAGCTTCTGCTCTGCCAGATGATATGAAGGATAAATAA 1743 0.4475 MEQEDCQLFAGLSLTTVSILILQVTAMSHRHLYSTSQVFESDHDQNWNSIHTDQQYVHLGRASTTENGSFVYPVENMPIDGISFASNWNSTTMPNGFASSSLNMEVPPHQSDASGTTHDHFLHSSSAAGFFAVSENYAHQPPPPPPPPPSSSNYDRQPFHVVDGGFIDLTMGNGRGPHKRKSPGIPPVCERGSTSRYVSAGSSTDLPMSSELRQEKPNMDSQYLPRDQVTMPLTFRGSGLSIRGEGSLRNVRSRPALDFESNPARTHLSGNHSHSYSTGLPIDHSSTMDLSGQSSSTLARNWSQMSTSHAHGRVLLPDTSACETSHFLVGSGASNASVDVGGYHHEFGTSRNPIVPQSLHNNLTQTARGVRSNFSQRSAPPFRSSSSLRLGHVATSDDGLQVVADSYSSRHPRPLATTGWRNTDRNGRSRISSDRYRQVADAPGLHDRFSSEGFMIVDRGLPYGSRSMVDQHRDMRMDIDDMSYEELLALGERIGHVNTGLSEDLISKCMTETIYCSSEQSQEEGTCVICLEEYKNMDDVGTLKTCRHDYHVSCIRKWLSMKNKCPICKASALPDDMKDK 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5356g00034 580 SMART ring_2 527 568 IPR001841 -
Pral5356g00034 580 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 492 573 IPR013083 -
Pral5356g00034 580 FunFam E3 ubiquitin-protein ligase MBR2 isoform A 492 573 - -
Pral5356g00034 580 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 175 573 IPR045191 GO:0061630
Pral5356g00034 580 MobiDBLite consensus disorder prediction 370 390 - -
Pral5356g00034 580 CDD RING-H2_RNF24-like 525 572 - -
Pral5356g00034 580 MobiDBLite consensus disorder prediction 264 282 - -
Pral5356g00034 580 SUPERFAMILY RING/U-box 516 574 - -
Pral5356g00034 580 MobiDBLite consensus disorder prediction 408 431 - -
Pral5356g00034 580 MobiDBLite consensus disorder prediction 411 426 - -
Pral5356g00034 580 Pfam Ring finger domain 526 569 IPR001841 -
Pral5356g00034 580 MobiDBLite consensus disorder prediction 138 153 - -
Pral5356g00034 580 MobiDBLite consensus disorder prediction 136 221 - -
Pral5356g00034 580 ProSiteProfiles Zinc finger RING-type profile. 527 569 IPR001841 -
Pral5356g00034 580 MobiDBLite consensus disorder prediction 195 221 - -
Pral5356g00034 580 MobiDBLite consensus disorder prediction 260 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5356g00034 Pral-Chr5356 120410 126687 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5356g00034 27 579 C3H Transcription Factor Family AT2G37150 40.351 8.52e-107 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5356g00034 - - gmx:100803627 839.336