Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5356g00019 ATGGCCAACGGCTCGTCCTTTTTGTTTTCGGGCATTAGCTTCGATAGAAAAAGGTTCGGCAGCGATATTGCCAAGTTCGAGAAAAAAGAAAAAGATCATTCCGTGAAGGTTTCGAGCTCGGTTGAAATTGAGAAAGCAGAATCAGTTGATGGAAAGGCGCCTGCGAAGAAGAGGAAGCGGAAGGGAGTGGTTTCAGAAACAGTTGAGGGATTCAATGTCTTTAAGAAGTCCAAATCAGCGGTACTTCAACCTAAAGATGAAGATAAAGTTGTGGTTGAGTCCATTCAGCAGACAAAAGAGCAAAATAAGCAACTCGAGCGGGATGCTCTATTCAGGAAGAGGCACAACATTCATGTGTCTGGGTACAATGTCCCGTCCCCGCTTCAAAATTTTGAGGACTTGAGCTCAAGATATAAATGTGAACCATATATGTTACGCAATCTGGCAAAACTCGGATTCATAGAACCCACACCAATTCAAAGACAAGCTATTCCTGTTCTCTTACATGATCGTGAATGCTTTGCCTGTGCCCCAACTGGCTCTGGAAAAACCTTGGCATTTGTTTGTCCTATGCTTATAAAGCTCAAGGATCCTTCAAAAAATGGCATTCGAGCTGTTATCCTTTGTCCCACTCGTGAATTATCTTCTCAAACTTACAGAGAGTGCAAAAAGCTGGCTAAAGGAAAAAAGTTCCGTATCAAGTTAATGACGAAAGAGCTAGCAAGAAATGGTGATTTTACTAGATTTTCATGTGATATACTTATATCCACACCACTTCGGTTACACTTGGCTATCCGGAGGAAAAAGATTGACCTCAGCCGAGTTGAGTATCTTGTCCTGGATGAATCTGATAAGCTTTTTGAGCTGGGGTTATTCGAGCAGATTGATTCTGTTATCCAAGCATGTTCAAACCCCTCAATAATACGCTCACTTTTCAGTGCCACTTTGCCTGATTCTGTTGAGGATCGTGCTCGGGAGCTTATGCATGATGCCATTAGAGTTATTGTTGGCAGAAAGAATATGGCTTCTGAAACAATAAAGCAAAAATTAGTTTTTACTGGAAATGAGGAGGGAAAACTTATGGCAATTCGCCAAAGCTTTGCAGAGAGTTTAAATCCCCCAGTATTGGTCTTCGTCCAAAGCAAGGAGCGAGCAAAAGAACTCTATGGTGAACTACAATTTGACAACCTCAGAGTTGGTGTTATCCATTCTGATTTGTCTCAAAAGGAGCGAGAAGATGCTGTGGATAATTTCAGAGCGGGAAAAACATGGGTTTTGATTGCTACTGATGTAGTTGCTAGAGGCATGGATTTCAAAGCTGTGAAATGTGTGATCAACTACGATTTTCCAGATTCTGCTGCTGCTTACATCCATAGGATAGGTCGTTCTGGGAGAGCAGGGAGGGCTGGAGAAGCCATAACATTTTATTCGGAGGAAGACATGCCCTTGCTGCGTAATATAGCCAATCTGATGGCAACATCAGGCTGTGAAGTTCCAACTTTTCTCCTGGAGCTGCCCAAAAAGAAGTGGAAGAAACACCGTCCCAAAAGAGATTCTATCTCTACCAAACCCAAAGTATAA 1581 0.4238 MANGSSFLFSGISFDRKRFGSDIAKFEKKEKDHSVKVSSSVEIEKAESVDGKAPAKKRKRKGVVSETVEGFNVFKKSKSAVLQPKDEDKVVVESIQQTKEQNKQLERDALFRKRHNIHVSGYNVPSPLQNFEDLSSRYKCEPYMLRNLAKLGFIEPTPIQRQAIPVLLHDRECFACAPTGSGKTLAFVCPMLIKLKDPSKNGIRAVILCPTRELSSQTYRECKKLAKGKKFRIKLMTKELARNGDFTRFSCDILISTPLRLHLAIRRKKIDLSRVEYLVLDESDKLFELGLFEQIDSVIQACSNPSIIRSLFSATLPDSVEDRARELMHDAIRVIVGRKNMASETIKQKLVFTGNEEGKLMAIRQSFAESLNPPVLVFVQSKERAKELYGELQFDNLRVGVIHSDLSQKEREDAVDNFRAGKTWVLIATDVVARGMDFKAVKCVINYDFPDSAAAYIHRIGRSGRAGRAGEAITFYSEEDMPLLRNIANLMATSGCEVPTFLLELPKKKWKKHRPKRDSISTKPKV 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5356g00019 526 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 133 161 IPR014014 GO:0003724
Pral5356g00019 526 SMART ultradead3 152 349 IPR014001 -
Pral5356g00019 526 CDD DEADc_DDX52 145 337 IPR044764 GO:0003724|GO:0005524|GO:0030490
Pral5356g00019 526 SMART helicmild6 386 467 IPR001650 -
Pral5356g00019 526 CDD SF2_C_DEAD 346 476 - -
Pral5356g00019 526 Gene3D - 342 521 IPR027417 -
Pral5356g00019 526 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 345 506 IPR001650 -
Pral5356g00019 526 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 201 487 IPR027417 -
Pral5356g00019 526 Pfam Helicase conserved C-terminal domain 369 467 IPR001650 -
Pral5356g00019 526 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 164 334 IPR014001 -
Pral5356g00019 526 Gene3D - 108 341 IPR027417 -
Pral5356g00019 526 Pfam DEAD/DEAH box helicase 157 321 IPR011545 GO:0003676|GO:0005524
Pral5356g00019 526 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 92 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5356g00019 Pral-Chr5356 71545 76657 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5356g00019 127 505 Eukaryotic Initiation Factors Gene Family AT3G19760 31.496 1.95e-58 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5356g00019 K14779 - qsa:O6P43_006697 797.734