Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5356g00013 ATGTACGGAACTCCGTTAGAGAGAAACATTGTTGGATATGGCTCCTTGGATCCAAGTGGGTTCATGGATGTAGTGGGCATTTATTTTCCTCAGCAGCTTTTCACAGTCGAACAAAGCTGGCTCGACCTCATGTCTGCTCTCATCTCTTTCTTTTCTTCTCCATCGGGCAAAAACCTAACTTCCCAGGTTAAAAATCATCATGGCAGCTTTGCCTTATCACTTGACTTCCAGCAGTTTCAAAATATATGCCATATTGAGGAATTCTATAAAATGTTAGAGGAGAAACCTAAAATCGCTCTCTTGTGCATGAGCGCTGCAGTTCATAAGGTTCTTAGTGCCATATGGGAGAGTGACCAACTTGAGGATGGTGCAAAAGTAGACATCCGACTGCATAACTGTCCTGAAACTATGATTGCTCTGAAAAACTTAAAAGCAGTATATATTGACAAACTTGTCTCAGTGCGTGGTACTGTTGTGAAGGCCAGCACTGTCAGGCCTCTTGTGATGGATATGAGTTTTGAATGCGGAAAGTGCAAACAAAGAATTAGGCGTATCTTTCCTGATGGAAAATTTTCACCACCATCAATTTGCAATTTGAATGGCTGCAAGAGCAAAATATTTAACCCATTACGATCTACAGCTCAAGCTATAGATTTTCAAAAAATAAGGTTGCAGGAACTCCTAAAACCCGAAGACCATGAAGAAGGACGAGTTCCTCGGACAGTGGAATGTGAGCTCATCCAAGACCTCGTTGATACATGCATACCTGGAGATGTGTTGACTGTCACTGGAATAATAAGGGGAATTAACACTTACATGGATATTGGTGGAGGAAAGTCGAAGAACAGAAGCCAGGGATTTTACTATTTGTATCTCGAAGCTGTTTCCGTGCAAAATTCCAAGTCACAGTCTACAAATGAGGATTTGCAAGACACTAATCCCAAAGCAAGACCGGCTGAGCTGCTTGATTTGTTTTCATTTTCTTCCAGGGATTTAGAGTTTATTGTGAAATTTTCGATGGAGCATGGCTCAGATTTGTTTCGGCAAATTCTTCAATCTATATGCCCATCTATCTATGGGCATGAGCTTGTTAAAGCTGGGATTACGCTGGCATTATTTGGGGGTGTGCGAAAACATTCTATGGATCAGAATAAGGTTCCTGTAAGGGGAGACATTCATGTCATAATTGTCGGTGATCCTGGACTAGGCAAGAGCCAATTGCTACAAGCAGCAGCCGCTGTTTCTCCGCGAGGCATCTATGTCTGTGGTAATGCGACAACTAAAGCCGGCCTCACAGTAGCTGTAGTAAAGGATCCTATGACGAGTGACTATGCTTTTGAGGCCGGGGCTATGGTGTTGGCTGACAGTGGATTGTGTTGCATTGATGAGTTCGATAAAATGTCAGCCGAACATCAGGCTCTACTGGAGGCCATGGAACAACAGTGTGTCTCTATTGCAAAGGCAGGATTGGTGGCAAGTTTATCAGCTCGAACTTCTGTCTTAGCGGCAGCAAATCCAGTCGGTGGTCATTATAACCGCGCGAAGACTGTGAATGAAAACTTGAAAATGAGTGCCGCTCTGCTGTCCCGATTTGATTTAGTTTTCATACTGCTGGACAAACCTGATGAACTTCTGGACAAGCGAGTCTCGGAGCACATCATGTCACTTCATGCTGGTAATGGACAACTAGCAGTCAAAAAGCAACGTAGAGATTTACCTTCTGATTCAAGAATTACGGCACCACAGAATGCTGAAAGCATCGATTTGGGGGTTAGATCTGGTTCTTTAGTTTCAAAGTTGAGACTTGACCCACAACGAGATAGTGGTTTTGTACCATTGCCTACACAACTTCTTCGAAAATACATTGCTTATGCGAGGAGTTTTGTCTTCCCCAGGATGTCCAAGCCCGCAGCAGAAATCCTACAAAAGTTTTACCTTAAGCTGAGAGATCATAATACTTCAGCTGATGGTACACCGATAACGGCAAGGCAACTTGAAAGCCTCGTGAGGCTGGCTGAAGCTCGGGCTCGGCTAGACTTGAGGGAAGAAATAACGGCCCAGGATGCCATGGACGTAGTTGAAATAATGAAGGAATCCCTGTATGATAAATACGTAGATGAGCATGGATTTGTGGATTTTGGACGAAGTGGGGGGATGAGTCAACAGAAAGAGGCGAAACGCTTCCTAAGTGCCCTCAACAAACAATCAGAATTACAGCAGAAAGATTGCTTTTCAATATCTGAAATATATAGTCTGGCGGATAGAATTGGCCTACAAGTGCCTGATATTGACACTTTCATCGATAATTTAAACAGCGTTGGTTATCTACTCAAAAAGGGTCCAAAGACATACCAGGTGTTATCCTCCTCGTATACGCGAAGCCAATCATCTAGGGCAAAGAGCTAA 2406 0.4343 MYGTPLERNIVGYGSLDPSGFMDVVGIYFPQQLFTVEQSWLDLMSALISFFSSPSGKNLTSQVKNHHGSFALSLDFQQFQNICHIEEFYKMLEEKPKIALLCMSAAVHKVLSAIWESDQLEDGAKVDIRLHNCPETMIALKNLKAVYIDKLVSVRGTVVKASTVRPLVMDMSFECGKCKQRIRRIFPDGKFSPPSICNLNGCKSKIFNPLRSTAQAIDFQKIRLQELLKPEDHEEGRVPRTVECELIQDLVDTCIPGDVLTVTGIIRGINTYMDIGGGKSKNRSQGFYYLYLEAVSVQNSKSQSTNEDLQDTNPKARPAELLDLFSFSSRDLEFIVKFSMEHGSDLFRQILQSICPSIYGHELVKAGITLALFGGVRKHSMDQNKVPVRGDIHVIIVGDPGLGKSQLLQAAAAVSPRGIYVCGNATTKAGLTVAVVKDPMTSDYAFEAGAMVLADSGLCCIDEFDKMSAEHQALLEAMEQQCVSIAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRVSEHIMSLHAGNGQLAVKKQRRDLPSDSRITAPQNAESIDLGVRSGSLVSKLRLDPQRDSGFVPLPTQLLRKYIAYARSFVFPRMSKPAAEILQKFYLKLRDHNTSADGTPITARQLESLVRLAEARARLDLREEITAQDAMDVVEIMKESLYDKYVDEHGFVDFGRSGGMSQQKEAKRFLSALNKQSELQQKDCFSISEIYSLADRIGLQVPDIDTFIDNLNSVGYLLKKGPKTYQVLSSSYTRSQSSRAKS 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5356g00013 801 CDD MCM8_WHD 722 787 - -
Pral5356g00013 801 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 62 737 IPR031327 GO:0003677|GO:0005524|GO:0032508
Pral5356g00013 801 FunFam DNA helicase MCM8 isoform X1 167 218 - -
Pral5356g00013 801 Gene3D - 140 269 IPR012340 -
Pral5356g00013 801 SUPERFAMILY Nucleic acid-binding proteins 67 270 IPR012340 -
Pral5356g00013 801 CDD MCM8 350 699 - -
Pral5356g00013 801 PRINTS Mini-chromosome maintenance (MCM) protein family signature 449 463 IPR001208 GO:0003677|GO:0005524|GO:0032508
Pral5356g00013 801 PRINTS Mini-chromosome maintenance (MCM) protein family signature 476 489 IPR001208 GO:0003677|GO:0005524|GO:0032508
Pral5356g00013 801 PRINTS Mini-chromosome maintenance (MCM) protein family signature 389 404 IPR001208 GO:0003677|GO:0005524|GO:0032508
Pral5356g00013 801 PRINTS Mini-chromosome maintenance (MCM) protein family signature 500 512 IPR001208 GO:0003677|GO:0005524|GO:0032508
Pral5356g00013 801 PRINTS Mini-chromosome maintenance (MCM) protein family signature 527 535 IPR001208 GO:0003677|GO:0005524|GO:0032508
Pral5356g00013 801 SMART AAA_5 390 542 IPR003593 GO:0016887
Pral5356g00013 801 Pfam MCM OB domain 140 268 IPR033762 -
Pral5356g00013 801 ProSiteProfiles MCM family domain profile. 346 553 IPR001208 GO:0003677|GO:0005524|GO:0032508
Pral5356g00013 801 Pfam MCM P-loop domain 340 557 IPR001208 GO:0003677|GO:0005524|GO:0032508
Pral5356g00013 801 Coils Coil 461 481 - -
Pral5356g00013 801 Gene3D - 324 709 IPR027417 -
Pral5356g00013 801 Gene3D - 167 217 - -
Pral5356g00013 801 Pfam MCM AAA-lid domain 617 700 IPR041562 -
Pral5356g00013 801 SMART mcm 136 701 IPR031327 GO:0003677|GO:0005524|GO:0032508
Pral5356g00013 801 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 356 706 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5356g00013 Pral-Chr5356 45486 51826 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5356g00013 16 787 Core DNA Replication Machinery Family AT3G09660 72.036 0.0 1151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5356g00013 K10737 - gmx:100784549 1307.35