Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5356g00007 ATGAACTCCACCACTTCGAATTCTCAATCAATGGCGACCTCGACGCCCACTGACGGGTCTAGCAAGAAGGTGAGAAAGCCCTATACCATTACCAAATCGAGGGAAAGCTGGACAGAGGAAGAGCATGACAAGTTTCTAGAAGCTCTTCAACTATTTGACAGAGATTGGAAGAAAATTGAAGATTTTGTCGGTTCAAAAACAGTTATTCAGATTCGAAGCCATGCCCAGAAATACTTCTTAAAAGTTCAGAAGAACGGGACAATTGCACACGTGCCTCCTCCTCGACCTAAGCGCAAAGCTGCTCATCCATACCCTCAAAAGGCGCCAAAGAATGTCTTAGTTCCATTGCCAGCATCCATGGCTTACGTTTCTTCAACAAATACTATTGCACCTGGGTATGCCACATGGGATGAAAATTCAATGCCGATTAATGCTGGATCAAACAGATACATACCATGTCAGGATGAAATCACCACCCTTCATGGGAATGAAGCTGATATTGGATCAAAGGGGATATCAAGAATTAGCAACAGCAGCCTCAGCGGTGTAGGAACTTCTACTAGAATGCTACAAAGTTCTGAGATGCCCAAGCAAGGAAAACAAGCTCCAGTGCTTCATGGTTTACCGGACTTTGCTGAGGTTTACGGCTTTATTGGAAGTGTTTTTGATCCAGATACAAAAGGACATGTCCAGAAGCTGAAGGAAATGGATCCTATAAATTTTGAAACTGTTTTGTTGTTGATGAGAAACCTCACTGTCAACTTGTCTAGCCCTGATTTTGAGCCTTTTGAGAATGTTTTGTCATCGTATGCTGCCAGTACGAAGATAGCAGAAGTTACCGCAGGAATTGCTGCCAAAAAGGAAACGCCAAGCGATCTATCATGTCAACCTGCTTAA 897 0.4326 MNSTTSNSQSMATSTPTDGSSKKVRKPYTITKSRESWTEEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTIAHVPPPRPKRKAAHPYPQKAPKNVLVPLPASMAYVSSTNTIAPGYATWDENSMPINAGSNRYIPCQDEITTLHGNEADIGSKGISRISNSSLSGVGTSTRMLQSSEMPKQGKQAPVLHGLPDFAEVYGFIGSVFDPDTKGHVQKLKEMDPINFETVLLLMRNLTVNLSSPDFEPFENVLSSYAASTKIAEVTAGIAAKKETPSDLSCQPA 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5356g00007 298 SMART sant 33 81 IPR001005 -
Pral5356g00007 298 Pfam Myb-like DNA-binding domain 34 79 IPR001005 -
Pral5356g00007 298 SUPERFAMILY Homeodomain-like 28 84 IPR009057 -
Pral5356g00007 298 ProSiteProfiles SANT domain profile. 32 85 IPR017884 -
Pral5356g00007 298 CDD SANT 36 79 IPR001005 -
Pral5356g00007 298 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 83 IPR017930 -
Pral5356g00007 298 PANTHER SWI/SNF COMPLEX-RELATED 7 256 - -
Pral5356g00007 298 MobiDBLite consensus disorder prediction 1 26 - -
Pral5356g00007 298 MobiDBLite consensus disorder prediction 1 36 - -
Pral5356g00007 298 FunFam protein REVEILLE 6 isoform X1 36 84 - -
Pral5356g00007 298 Gene3D - 37 84 - -
Pral5356g00007 298 NCBIfam myb-like DNA-binding domain, SHAQKYF class 32 81 IPR006447 GO:0003677
Pral5356g00007 298 ProSiteProfiles Myb-like domain profile. 29 79 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5356g00007 Pral-Chr5356 19343 25141 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pral5356g00007 Myb_DNA-binding 4.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5356g00007 - - pcin:129305289 541.191