Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5356g00003 ATGATAAAGAATTTCAAGAATTGGCTCAGCGTCTGCAAGATGGTAAAAAACCACCAAAGAGGGAGCTGCTGGGACGGACATAATTTCCATGAGGATGATGAGTTAAAAAGTAATGGAACAGCTGAAGAAGTTAAAGTGGGACAAGATGGAATTGTGGAAGCTCCAGCCGTTCAGCATATGCCACAACAGCAACCTCAAGGGGCAATTTGGGAGAGGTTCCTACATCTCAGATCACTCAAGGTCTTGCTTGTGGAGATTGATGACTCTACTCGTCATGTTGTTGCGGCACTGCTTCGCAATTGTAGTTATGAAGTTATTGAAGCAGCAAACGGATTGCAAGCATGGAAGATCTTGGAAGATCTAACCAGTCAAATAGATCTTGTCTTGACTGAGGTAGCTATGCCTTGCTTATCAGGCATTGGCCTTCTGTCCAAAATTATGGGCCATAAAACGCGGAAAAACATTCCAGTAATTATGATGTCATCTCATGACTCTATGGGTTTAGTCTTTAAGTGTTTGTCAAAGGGTGCCGTTGACTTTCTAGTGAAACCTATTCGGAAGAATGAGCTTAAAAACCTATGGCAGCATGTGTGGAGAAGATGTCATAGTTCAAGTGGTAGTGGAAGTGAAAGTGGCACACAAACTCAGAAATCCATTAAATCAAAGAGTGTTGAGAAGTCTGATAACAACAGTGGCAGCAACGATGAGAAGACAATGGTAGTGTGGGTCTTAATAACGGGGATGGAAGTGACAATGGTAGTGGTACTCAGGTATGACTGTTTCTTCGTTCATTGA 795 0.4239 MIKNFKNWLSVCKMVKNHQRGSCWDGHNFHEDDELKSNGTAEEVKVGQDGIVEAPAVQHMPQQQPQGAIWERFLHLRSLKVLLVEIDDSTRHVVAALLRNCSYEVIEAANGLQAWKILEDLTSQIDLVLTEVAMPCLSGIGLLSKIMGHKTRKNIPVIMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGTQTQKSIKSKSVEKSDNNSGSNDEKTMVVWVLITGMEVTMVVVLRYDCFFVH 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5356g00003 264 SMART REC_2 79 194 IPR001789 GO:0000160
Pral5356g00003 264 ProSiteProfiles Response regulatory domain profile. 80 198 IPR001789 GO:0000160
Pral5356g00003 264 MobiDBLite consensus disorder prediction 203 220 - -
Pral5356g00003 264 PANTHER TWO-COMPONENT RESPONSE REGULATOR 79 242 IPR045279 GO:0009736
Pral5356g00003 264 Gene3D - 78 240 - -
Pral5356g00003 264 SUPERFAMILY CheY-like 77 204 IPR011006 -
Pral5356g00003 264 Pfam Response regulator receiver domain 81 192 IPR001789 GO:0000160
Pral5356g00003 264 FunFam Two-component response regulator-like PRR37 79 237 - -
Pral5356g00003 264 MobiDBLite consensus disorder prediction 203 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5356g00003 Pral-Chr5356 325 3871 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5356g00003 31 236 Response Regulator Gene Family AT5G60100 64.078 1.01e-75 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pral5356g00003 Response_reg 6.2e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5356g00003 K12129 - lja:Lj0g3v0253349.1 346.665