Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5354g00002 ATGGACCTCCCCTTGTTTAACCGCTCTCAGCTGGAGCTCCTCCACCTGCCACATCCCCACTTATCCGGTCCCACCCTCGGCGAACTCCTCAAACGCGTCGATGATGCACAAAACGACACCCCTCCCCACCGTATACTCCACCTCGCTCCCCCTCCTTCCTCTTACCCATTCATTCTTTCCTTCACCAACTTAACTTACAGCGTCAAAGTCCACCGCAAAATGACCCTCCCTCAAAACCACGTCGTTTCGGAACATCGCAATGCCGGTAAGGGCACCAAGATTCTACTCAATAACATCTCAGGCGAGGCCAGAGACGGACAAATCATGGGCGTGCTCGGTGCCAGTGGGTCTGGCAAATCCACCCTCATCGATGCCCTCGCCGATCGAATCTCCAAGGACAGCTTAAAAGGCTCCGTCACCTTAAACGGTGAGGCTTTGGAGTCCAGACTTCTCAAGGTCATTTCCGCTTACGTCATGCAAGATGACCTTCTCTTCCCCATGCTCACAGTGGAAGAAACTCTCATGTTCTCCGCCGAGTTTCGCCTCCCTCGCTCCCTCTCTGCCTCAAAGAAGAAGGCCAGAGTCCAAGTACTCATTGACCAGCTCGGCCTCCGGAACGCAGCCAAAACAGTAATCGGAGATGAGGGCCACCGTGGCGTCTCCGGCGGTGAAAGGCGTCGAGTCTCTATCGGAATCGACATCATCCACGACCCGATCATTCTGTTCCTCGATGAACCTACTTCTGGACTGGATTCCACTAGCGCATTCATGGTTGTTAAGGTCTTGCAGCGAATCGCTCAGAGTGGGAGCATCGTCGTCATGTCCGTACACCAACCAAGTTATAGGATCCTCGGCTTATTAGATCGTTTGATTTTTCTCTCTCGTGGCCAAACCGTATATACCGGCTCTCCTGCGAATCTCCCGAGCTTCTTCTCGGAGTTCGGTCACCCGATACCCGACAAGGAGAACCGGACTGAGTTCGCACTGGATCTTATTCGTGAGCTCGAAGAATCACCAGGTGGGACCCAGAGTTTAGTGGAGTTCAACAAATCGTGGCAGTTAAATGCGGCGAAAAATAAACCAGCCACCAACCGATTCTTCACCGGAACTCTCAAGGACGCCATTGCCGCCAGCATTTCCAGAGGTAAATTAGTGTGCGGTGCACCGCATCATTCCAACGTCACCGCGTCGTCGGTTCCGAAATATGCTAATCCATTTTGGATGGAGATGATGGTGATAGCGAAACGATCGCTCACCAATTCCAGAAGAATGCCAGAACTATTCGGAATCCGACTCGGTGCGGTTCTCGTAACCGGAGGTATCTTAGCCACCATCTTCTGGCATCTGGATAATACTCCTAAAGGCGTTCAAGAACGCCTCGGTTTCTTCGCCTTCGCAATGTCCACCACCTTCTACACCTGCGCCGAGGCCTTCCCCGTCTTTCTCCAAGAGCGATACATCTTCATGAGAGAAACTGCTTACAATGCATACCGGCGTTGGTCCTACGTGCTAGCCCATTCCATAATCTCAATCCCCTCCTTGGCTGTCCTCTCTGCAGCATTCGCCGCCACCACATTCTGGTCGGTGGGTCTGGCCGGCGGGAGCTCCGGCTTCCTGTTCTACTTTCTCGTAATGTTCGCGTCCTTCTGGGCGGGAAGCTCCTTCGTGACGTTCCTATCGGGGATAGTGTCGCATGTGATGTTGGGATTCACTGTGGTGGTGGCAATTCTAGCATACTTCCTTCTGTTCAGCGGATTCTTCATAAGCAGAGACAGGATGCCACTGTACTGGATATGGTTTCATTACATGTCGCTGGTGAAGTACCCGTACGAGGGGGTGTTGCAGAACGAGTTCGGGATGGAGCCGCCGAGGTGTTTTGTGAGGGGGACACAGATGTTCGACAACACGCCGTTGGGGGAGGTGACGACGTCGTTGAAGGTGGAGTTGCTGAAGAGCATGAGCAAGACGCTGGGGATGAGCATAAACAGCGAGACGTGCGTGACCACGGGAGCCGATATACTGAGGCAGCAGGGGATTACGGAGCTCAGCAAGTGGGGATGCTTCTGGGTAACGCTTGCTTGGGGATTTTTCTTTAGGTTTTTGTTCTACTTGACGCTAGTGTTTGGAAGCAAGAACAAGAGGAGTTAA 2148 0.5293 MDLPLFNRSQLELLHLPHPHLSGPTLGELLKRVDDAQNDTPPHRILHLAPPPSSYPFILSFTNLTYSVKVHRKMTLPQNHVVSEHRNAGKGTKILLNNISGEARDGQIMGVLGASGSGKSTLIDALADRISKDSLKGSVTLNGEALESRLLKVISAYVMQDDLLFPMLTVEETLMFSAEFRLPRSLSASKKKARVQVLIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPIILFLDEPTSGLDSTSAFMVVKVLQRIAQSGSIVVMSVHQPSYRILGLLDRLIFLSRGQTVYTGSPANLPSFFSEFGHPIPDKENRTEFALDLIRELEESPGGTQSLVEFNKSWQLNAAKNKPATNRFFTGTLKDAIAASISRGKLVCGAPHHSNVTASSVPKYANPFWMEMMVIAKRSLTNSRRMPELFGIRLGAVLVTGGILATIFWHLDNTPKGVQERLGFFAFAMSTTFYTCAEAFPVFLQERYIFMRETAYNAYRRWSYVLAHSIISIPSLAVLSAAFAATTFWSVGLAGGSSGFLFYFLVMFASFWAGSSFVTFLSGIVSHVMLGFTVVVAILAYFLLFSGFFISRDRMPLYWIWFHYMSLVKYPYEGVLQNEFGMEPPRCFVRGTQMFDNTPLGEVTTSLKVELLKSMSKTLGMSINSETCVTTGADILRQQGITELSKWGCFWVTLAWGFFFRFLFYLTLVFGSKNKRS 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5354g00002 715 SMART AAA_5 105 297 IPR003593 GO:0016887
Pral5354g00002 715 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 89 312 IPR027417 -
Pral5354g00002 715 Gene3D - 83 311 IPR027417 -
Pral5354g00002 715 Pfam ABC-2 type transporter 410 618 IPR013525 GO:0016020|GO:0140359
Pral5354g00002 715 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 44 703 - -
Pral5354g00002 715 ProSitePatterns ABC transporters family signature. 220 234 IPR017871 GO:0005524|GO:0016887
Pral5354g00002 715 FunFam ABC transporter G family member 6 85 311 - -
Pral5354g00002 715 Pfam ABC transporter 96 248 IPR003439 GO:0005524
Pral5354g00002 715 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 59 320 IPR003439 GO:0005524
Pral5354g00002 715 Pfam ABC-2 type transporter 277 362 IPR043926 GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5354g00002 Pral-Chr5354 13181 15383 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5354g00002 95 280 Calmodulin-binding Proteins AT2G36910 29.630 1.10e-10 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5354g00002 K05681 - gmx:100803426 1068.53